Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00206 ATGTTAGTGAAAAACCACAATAAAGGGGATGGATCCAAGTCCCTGGCCGATACACTGGCGAGATGGAAGGAATATAATGCTTGGCTTGAATCTAGCAATGAGGCTGAGAAGCCAGTTAGAAAAGTTCCTGCCAAAGGATCAAAGAAGGGGTGTATGAAAGGTAAAGGGGGACCTGAGAACTCGCGTTGTAACTACCGAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTGGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTATGGTTGGGTACTTTTCCCACTGCCATTAGTGCTGCTCTAGCTTATGATGAAGCAGCTAGGGCAATGTATGGTTCTGGTGCACGTCTCAACTTCCCCAACGTTGAGGTTTCAACTTTATCTGAGGAATCATCAAGAAATTCTCCAGCTGCTAGTCAATCTGGTTCTGTGTTGATGATATCAGAGAGTTCTGAGTTTATGATATTTCCGAACCGCTCTGGGGGAGACGCGGCTAAAGATGATGACATGGAAGACCTTTCCTTGTCCTTAAGTGTTAAACATGAGGTAGTGGAGGGTGAATCCGGGACCAGTTCACCCCATCTTTCATTGTCTTGA 600 0.4667 MLVKNHNKGDGSKSLADTLARWKEYNAWLESSNEAEKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAARAMYGSGARLNFPNVEVSTLSEESSRNSPAASQSGSVLMISESSEFMIFPNRSGGDAAKDDDMEDLSLSLSVKHEVVEGESGTSSPHLSLS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00206 199 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Lapu11g00206 199 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Lapu11g00206 199 MobiDBLite consensus disorder prediction 178 199 - -
Lapu11g00206 199 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Lapu11g00206 199 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Lapu11g00206 199 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Lapu11g00206 199 MobiDBLite consensus disorder prediction 32 63 - -
Lapu11g00206 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 144 - -
Lapu11g00206 199 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Lapu11g00206 199 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Lapu11g00206 199 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Lapu11g00206 199 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00206 Lapu-Chr11 4807806 4809624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00206 8 153 AP2-EREBP Transcription Factor Family AT2G40340 54.667 5.20e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu11g00206 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00206 - - gmx:100783729 338.191