Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00199 ATGGTGAGAACTCCATCTTGTGACAAAAGTGGATTGAGGAAGGGTACTTGGACTCCAGAGGAAGATAGAAAATTAATTGCTTATGTCACTAGATTTGGTTCCTGGAATTGGCGCCAACTTTGCAGATGGTCTGCTATTGCGGCTGAGTTACCTAGCAGAACATGTGTGGAAGTAAAAAACCATTGGCACACCACCCTCAAGAAAAGGTCTCAACAAAAACCGCTCACAAACGAAGAAGCTAGAGCCCCCAAATCATCAAAGAATAAAGAATCCATAGATTCGGTTCCTAACAGAAATGGTGTTACTTCCCAGATTTCGAATAATTCATCAACCTTGTTCTCATTCTCATCACTTTCTTCCTCCAGCGACGAGTTTTCCTCAGGGCCATGTTTCCCTTAA 399 0.4261 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRFGSWNWRQLCRWSAIAAELPSRTCVEVKNHWHTTLKKRSQQKPLTNEEARAPKSSKNKESIDSVPNRNGVTSQISNNSSTLFSFSSLSSSSDEFSSGPCFP* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00199 132 ProSiteProfiles Myb-like domain profile. 9 66 IPR001005 -
Lapu11g00199 132 SMART sant 13 68 IPR001005 -
Lapu11g00199 132 CDD SANT 16 66 IPR001005 -
Lapu11g00199 132 Gene3D - 16 97 - -
Lapu11g00199 132 SUPERFAMILY Homeodomain-like 3 78 IPR009057 -
Lapu11g00199 132 MobiDBLite consensus disorder prediction 72 88 - -
Lapu11g00199 132 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 70 IPR017930 -
Lapu11g00199 132 MobiDBLite consensus disorder prediction 89 107 - -
Lapu11g00199 132 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Lapu11g00199 132 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 40 - -
Lapu11g00199 132 MobiDBLite consensus disorder prediction 66 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00199 Lapu-Chr11 4729302 4730018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00199 1 75 MYB Transcription Factor Family AT5G60890 36.364 3.90e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu11g00199 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00199 K09422 - gmx:100777107 133.65