Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00198 ATGAAGTGCGAACTGTGCAAGCTTCCGGCCAGGATTTTCTGCGAGTCGGACCAGGCCAGCTTGTGCTGGAACTGCGACGCAAAGGTTCACGGCGCCAACTTCTTGGTCGCCAGACACTCGCGAACCCTCCTCTGCCGCACGTGCCACTCTCCCACGCCGTGGAAGGCCGCCGGCGCAAGACTCGCCAACGCCGCCTCCATCTGCAACCGCTGCGCCGCCTCCCCCGCGGAAGAACCGAACGAGACCGAATCCGGCAATGACGAGGAACAAGACACCGAGGACGAAGATGTCGCCGGCGAGGAGGACGGCGAGAACCAGGTCGTGCCGTGGTCCTCTACACCGCCTCCGCCGCCTAGCTCCTCCGGCAGCGAGTGGTCGTCGTTCAGCGGGTGCAAAAACGACGAGGAGGAGGAGGAAGGTGCGTCTGTTTCCGTATGTGAACCGGAAACGACAACATCCTCGTTGAAACGACAACGCGAGGAGGACGACGACGATGTTTCCGGTCGTGATCCGCAGGGGGTCAGAAGGGTTGCGCGTCTCAACGGAGGAGGTGGCGTGTGA 561 0.6292 MKCELCKLPARIFCESDQASLCWNCDAKVHGANFLVARHSRTLLCRTCHSPTPWKAAGARLANAASICNRCAASPAEEPNETESGNDEEQDTEDEDVAGEEDGENQVVPWSSTPPPPPSSSGSEWSSFSGCKNDEEEEEGASVSVCEPETTTSSLKRQREEDDDDVSGRDPQGVRRVARLNGGGGV* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00198 186 MobiDBLite consensus disorder prediction 81 102 - -
Lapu11g00198 186 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 144 - -
Lapu11g00198 186 MobiDBLite consensus disorder prediction 75 186 - -
Lapu11g00198 186 Pfam B-box zinc finger 1 41 IPR000315 GO:0008270
Lapu11g00198 186 MobiDBLite consensus disorder prediction 153 172 - -
Lapu11g00198 186 CDD Bbox1_BBX-like 2 44 - -
Lapu11g00198 186 ProSiteProfiles Zinc finger B-box type profile. 1 44 IPR000315 GO:0008270
Lapu11g00198 186 SMART bboxneu5 1 44 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00198 Lapu-Chr11 4715060 4717026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00198 2 103 C2C2-CO-like Transcription Factor Family AT5G54470 54.902 1.30e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu11g00198 zf-B_box 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00198 - - vun:114168631 298.516