Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00190 ATGGTGAGAACCCCATCTTGTGACAAAAGTGGATTGAGGAAGGGTACTTGGACTCCGGAGGAAGATAGAAAATTAATTGCTTATGTCACTAGATATGGTTCCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGATTGGCAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTGAGGCCTAACGTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGAATGCACAACAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAATTACCAGGCAGAACAGATAACGAAATAAAAAACCATTGGCACACCACTCTTAAGAGAAGGTCTCAACAAAACACCCACCCAAATGAAGAAGCTAGAGCCTTCAAATCTAAGAATAAAGAATCCAAGCAAGGTAGGGACTCGGTTCCCAACAATAAGGGTGTTACTGTTACTCTTCCATCCGCTTCCCAGACTTCTGATAATTCATCAACCTCAGTCTCACCAGTTTCATCCTCCAGCAGCGTGTTTTCCTCTACTACTTCAGATCTCTGGAGTGCTGCCAGCATGGAAAATTTGGTGTTTGAAGATGACTTTGGTTTTCTTGATTCATGTATAGAGCCTATGAATGAAAGTTTCTGGACAGAGCTAAATCTGGATGACATTTCCTACAGTGCAGCACGTGAAAAGGTGTCAGGAGATTCTAGTGGCGCAATTCAAAGTACAGGTGCTAGCGTCCATGATTCTTGTGCAATGTCTCCGCGCGGGTCAACCAGCGAAAGTATTGTTGTGGATAATGAGTTTGGCGGCTTTCTCGATGCATATGCAGATACAACAGTTGATAACTTTTGGATACAGCCATATGTGGCTGACATGTCCCACGTTCCAAGCGAACTTCTTGTCCCTTCCGTGGTAGAATCTGAATATTTTACTCCAATTTATGATGATTTGTGGGGGCAAAGTCATTTCTATTAG 975 0.4308 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEECIIRMHNKLGNRWSAIAAELPGRTDNEIKNHWHTTLKRRSQQNTHPNEEARAFKSKNKESKQGRDSVPNNKGVTVTLPSASQTSDNSSTSVSPVSSSSSVFSSTTSDLWSAASMENLVFEDDFGFLDSCIEPMNESFWTELNLDDISYSAAREKVSGDSSGAIQSTGASVHDSCAMSPRGSTSESIVVDNEFGGFLDAYADTTVDNFWIQPYVADMSHVPSELLVPSVVESEYFTPIYDDLWGQSHFY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00190 324 CDD SANT 69 112 IPR001005 -
Lapu11g00190 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu11g00190 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu11g00190 324 CDD SANT 16 61 IPR001005 -
Lapu11g00190 324 FunFam Transcription factor MYB14 69 142 - -
Lapu11g00190 324 FunFam MYB-related transcription factor 13 66 - -
Lapu11g00190 324 MobiDBLite consensus disorder prediction 142 176 - -
Lapu11g00190 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu11g00190 324 Gene3D - 6 67 - -
Lapu11g00190 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu11g00190 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu11g00190 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu11g00190 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Lapu11g00190 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu11g00190 324 SMART sant 13 63 IPR001005 -
Lapu11g00190 324 SMART sant 66 114 IPR001005 -
Lapu11g00190 324 MobiDBLite consensus disorder prediction 118 141 - -
Lapu11g00190 324 MobiDBLite consensus disorder prediction 111 176 - -
Lapu11g00190 324 Gene3D - 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00190 Lapu-Chr11 4541890 4543078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00190 1 186 MYB Transcription Factor Family AT2G31180 49.462 1.94e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g00190 Myb_DNA-binding 8.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00190 K09422 - gmx:778184 445.662