Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00188 ATGGTAAGAGCTCCTTATTTTGATAAAAACGGAACAAAGAAAGGGGCATGGAGTGAGGAAGAAGATAAGAGGCTTATTGCTTATGTTGAGAAATATGGTCATCCCAATTGGCGTCAGCTTCCAAAGTTTGCAGGGTTGCAAAGATGTGGAAAAAGCTGCAGACTTCGTTGGATGAATTACCTGCGGCCAAATCTAAAACGAGGAAACTATTCCCCCAAGGAAGAACAAATCATCACGGATTTGCATAAAAAGCATGGAAATAAATGGTCTCTGATTGCTGAAAGTCTACCCGGAAGAACAGACAACGAGATAAAGAACTACTGGCACAGCCACCTAAAGAAGTTCCTGAAGAGCAACAATAACACCTCTTGTGATGAAGATTTGAAGTCCATTGAATGCAAAGAGTTTGAAATGCCAATGAACGAGGCTCTTAGTGTTGAATCTCACCACATTTTGGAGAGTTCAGTGTCAATTTCCTCAGAAACTTCCTACACCGATCACAATTCCCCTTCACTTTCATCCTCTTCAAGTCACACAATGAACTTGTGCAAGGAAGAAGAAAGCGTTGCTTCATGGGAAACCTTGGATTTAGGGTTTAGTAGTAATTTCTGGACAGAACCGTTTATTTCAGAAAACGCACTCAATGAAGATTATTTTCCCATATCCTCGTACGGAACAGAACCGTTTTACTTGTGGTAG 699 0.4092 MVRAPYFDKNGTKKGAWSEEEDKRLIAYVEKYGHPNWRQLPKFAGLQRCGKSCRLRWMNYLRPNLKRGNYSPKEEQIITDLHKKHGNKWSLIAESLPGRTDNEIKNYWHSHLKKFLKSNNNTSCDEDLKSIECKEFEMPMNEALSVESHHILESSVSISSETSYTDHNSPSLSSSSSHTMNLCKEEESVASWETLDLGFSSNFWTEPFISENALNEDYFPISSYGTEPFYLW* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00188 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu11g00188 232 CDD SANT 69 112 IPR001005 -
Lapu11g00188 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 185 - -
Lapu11g00188 232 Gene3D - 69 135 - -
Lapu11g00188 232 Gene3D - 13 66 - -
Lapu11g00188 232 CDD SANT 16 61 IPR001005 -
Lapu11g00188 232 FunFam MYB-related transcription factor 13 66 - -
Lapu11g00188 232 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu11g00188 232 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu11g00188 232 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu11g00188 232 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lapu11g00188 232 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu11g00188 232 SMART sant 13 63 IPR001005 -
Lapu11g00188 232 SMART sant 66 114 IPR001005 -
Lapu11g00188 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00188 Lapu-Chr11 4506128 4507590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00188 1 213 MYB Transcription Factor Family AT2G31180 43.256 2.40e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g00188 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00188 K09422 - gmx:100781032 385.571