LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g00160	ATGGCGAATAACAGTGGAAAGTCCAGCAAAGAGGGAGTTGAAGAGACCCATCATCACAAAGTGTTTGGTGAAAGTGAAGGCCAAGATTGGGAGAAAGAGAAGGGAAAGGGTGTGGATTTGAGCTCAGGAAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCTATCTCAGAAAGACCTCTCAAGAAAATCCGCAGCCCCGAACACCAAAACCCCAATCAACAACCTTCATCATCATCATCATCATCGTCGTCGTCGTCGTCCTCTATGCTCTCTCTCCAACCTCCTTCATCAAGAATAGTGTTTCCTTTCGCTTTTGAAGGCTCTCAACACCCAATGCCATCATTCCCGCACTCATTTGGAACCGCAAACTTGCCTCTTTTTCGTCCCCCTCTTCAGCCAACGCAACAAATGATATCGTTTGGATCCCAACAGAACATGGGGTATCCACCATTCCTATGCCCAGATTCCACCATACCAAACCAACAACAGCTCCAACAACAGCAGCAGCAGTATCAGCATCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCACTCAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCTCAAGCACAGCCGTTGAATGCCACCAAGCTCTATAGGGGAGTGAGACAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCTATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCCAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGCTCCTGCTTCTTCTTCCAACGAAGGTTCAACATCAACATCAAGCCAGAACACGAAGCAACCTGAGCCAGTTCCAGAAGAGACCAACACTGAGAGTGAGGACATGCCACCAACTGAGACGTTAGCAGCAGAGAATGCTGAAACCGAGGAAGGAGTTTCACAGCCTCAGGAATTGGTTTGGGGAGAGTGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGGAGTCCTGTGTGGGATGATTTAGACCCCAACAATAATCTTCTTTTGCATTCACAACTTCCCTTTGTGAATCCAGCTCATCAAGAGTTCCATCACGATGCCAGTGCTTCTTCTCAGACACAACAAGATAACAACAACACAGGACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA	1293	0.4803	MANNSGKSSKEGVEETHHHKVFGESEGQDWEKEKGKGVDLSSGRRQWKPVFDDASISERPLKKIRSPEHQNPNQQPSSSSSSSSSSSSSMLSLQPPSSRIVFPFAFEGSQHPMPSFPHSFGTANLPLFRPPLQPTQQMISFGSQQNMGYPPFLCPDSTIPNQQQLQQQQQQYQHQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPAPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTETLAAENAETEEGVSQPQELVWGEWFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPAHQEFHHDASASSQTQQDNNNTGPGSSSPSCPMRPFF*	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	51	66	-	-
	Lapu11g00160	430	Pfam	AP2 domain	225	273	IPR001471	GO:0003700\|GO:0006355
	Lapu11g00160	430	PRINTS	Ethylene responsive element binding protein signature	247	263	IPR001471	GO:0003700\|GO:0006355
	Lapu11g00160	430	PRINTS	Ethylene responsive element binding protein signature	225	236	IPR001471	GO:0003700\|GO:0006355
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	393	430	-	-
	Lapu11g00160	430	SMART	rav1_2	224	287	IPR001471	GO:0003700\|GO:0006355
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	399	422	-	-
	Lapu11g00160	430	Gene3D	AP2/ERF domain	224	282	IPR036955	GO:0003700\|GO:0006355
	Lapu11g00160	430	CDD	AP2	223	283	IPR001471	GO:0003700\|GO:0006355
	Lapu11g00160	430	FunFam	Ethylene-responsive transcription factor 2	223	282	-	-
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	67	94	-	-
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	10	41	-	-
	Lapu11g00160	430	SUPERFAMILY	DNA-binding domain	224	282	IPR016177	GO:0003677
	Lapu11g00160	430	ProSiteProfiles	AP2/ERF domain profile.	224	281	IPR001471	GO:0003700\|GO:0006355
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	293	320	-	-
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	288	349	-	-
	Lapu11g00160	430	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	24	376	-	-
	Lapu11g00160	430	MobiDBLite	consensus disorder prediction	1	94	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g00160	Lapu-Chr11	4029015	4030319	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g00160	34	377	AP2-EREBP Transcription Factor Family	AT4G28140	42.939	1.94e-63	204

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lapu11g00160		AP2	2.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g00160	-		-	gmx:100811328	660.218