Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00142 ATGGCCTTGGATCACTTGGAGGAGACTGTGCCCCAAAAAGAAAAGTGGAAATCTTCCAACGAAGCCATTACAGATTCTGATATAAATGCCTCTAGTGGCTTTGACTGCAACATCTGCCTTGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTTTCAAAGTACCTCTCTAGACAGTGAAGAGCAACAGAATCCACAATGTCCAGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGCCGTGGCCTAACCACGATACCTTCTAAGGGGAAGGCTCATCAAGTTGGGACTGTCATACCACAAAGACCTCATGGTCCCAGAGCATTGAACACTAGAAGTGTTTCCCAACCTATTTCTCAAAGTTATCATTATCCCTATAGTAATCCTTATAATACTCAACAATTCAACACAGTTCCAACCGGTTATACCTCACCAATGCTTAGAACAAGTGGTTCAATAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAACCACGTGACAAACATGCATCCATATGCTAATTCGTACAATCTTTCAGGGATCAGTAACCCAAGGATGAGAAGACATTTAATGCACGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGCTGCCTAGTTTTGTGTCTCCTCCTATTCTGA 723 0.4177 MALDHLEETVPQKEKWKSSNEAITDSDINASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDSEEQQNPQCPVCKSEVSQSSLVPLYGRGLTTIPSKGKAHQVGTVIPQRPHGPRALNTRSVSQPISQSYHYPYSNPYNTQQFNTVPTGYTSPMLRTSGSIDNTFGIFGEMIYARVFGNHVTNMHPYANSYNLSGISNPRMRRHLMHVDKSLSRISCFLLCCLVLCLLLF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00142 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu11g00142 240 SMART ring_2 36 84 IPR001841 -
Lapu11g00142 240 Pfam RING-type zinc-finger 36 82 IPR027370 -
Lapu11g00142 240 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 19 98 - -
Lapu11g00142 240 SUPERFAMILY RING/U-box 23 91 - -
Lapu11g00142 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 114 IPR013083 -
Lapu11g00142 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Lapu11g00142 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Lapu11g00142 240 CDD RING-HC_AtRMA-like 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00142 Lapu-Chr11 3773608 3777507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00142 28 240 C3H Transcription Factor Family AT4G28270 40.000 5.05e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00142 K10666 - gmx:100786373 410.609