Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00133 ATGGGTTGCTTATGTTCTAAGAGTTCAGCTGTAGAGGACAGCAAGGTGGGTGTCACTAAGAAATTGCAATCGTATAGCACAAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAAGGCGGGGCTAAAGATGTGACAATAGACGGTGGTCATGTAAAAGGTTCATTGATTGACAAGAAGGCCAATGGTTCAGGGCAGTTGTATGGTGATCATGATGGGAAGAAAAAAATAGAGAAGCCTGAATTGACTGTTGTGGATCATATTGGCCCTGGAAGGATTCCAAAGGCTACAGAAGGAGAGCAAGTTGCAGCTGGATGGCCATCATGGCTTTCTTCGGTTGCCGGTGAAGCTATTAAGGGATGGATACCACGGAGAGCGAATACTTTTGAGAAGTTGGACAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCAAGGGATGTGATTAACCGCAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTGAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATAAAATTGGAGGGCTTGGTAACGTCACATATGTCTCGCAGCTTGTACCTGGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGACATCAAGTTCTCTGAACCACAGCTAAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAATCTTAAAAATAGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCCACCACAGTGTACCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCAAACCATTATGGGGTTGCAGTGGATTTGTGGAGCGCTGGTTGCATACTGGGTGAACTATATACTGGAAGGCCCATTTTACCAGGAAAAACAGAGGTTGAGCAATTGCATCGAATTTTTAAACTTTGTGGCTCACCATCTGATGACTATTGGCTTAAATTGCGGCTGTCACATTCGACAGTATTCAGGCCACCACACCATTATAGGCGATGTGTTGCAGAGACATTTAAGGACTACCCTTCTACTGCTGTAAAGCTTATAGAGACCCTACTTTCAATAGAACCGGCACATCGAGGGACTGCAGCAGCTGCTTTGAAAAGTGAGTTCTTTACATCCGAGCCTCTACCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGTAAGGAAATTGATGCTAAACTACGAGATGAAGTCAGAAGGCAAGGAGCTGTAGGAGGTAGGGACCAAAAAGTTGCCTCGGGATTTAGACAAGAAAAAGGGCATAGGGCCAATGTCACAACAAAAGACAATACTGACCCAGGTTTATCAGTACAGCAAGGACGTTATTCCAGCTCAAAGAACCGAAGTGAATTATACAACCCTCATAGGGGGTCAGTGTCTGGGATTCTGGTTTTTCCTCAAAAACAGTCAGAAGATGCTAAAGAAAGGGAAAAAAATTTCTCTGGGCATATTTATAAGAAGCCATCACATTCAGGCCCATTGGTTCCCGGTTCTGTTTGGGCAAAAGGAGCGAAGGAAGTTGATGATGTACCTCCTGTTCCAATCAGAGGGAACCTATCAAAACTATCTGGACTAGTGGCATCTAGGACTTTGTTGCCAGAAGATCAGGAGGATAAACCAGTTCAGTTACACCACAGAAAACCAATTGAAGTAAGAAAATCTATGGAGTCAACTAACGGATCAGAGTCAAGAAGAAGGCAGGAACAAAAAGGGATTGTTGATCTCAATCAAATTGAAAGCAAAAGAATCCCAACCGAAAAATCAACTCCGGGTGGGCGCGAGTCAATGGGAAACAAGATATACCTTTCAGGTCCATTAGTGGTGTCATCAAGCAACATGGATCAGATGCTTAAAGAGCATGATAGAAAGATCCAAGAGTTTTCAAGACGAGCAAGAATTGAGAAGTCAAGAGCAAGAGGTGATAGAGTTCGTGCGCAGAGGAAGTGGTGA 2100 0.431 MGCLCSKSSAVEDSKVGVTKKLQSYSTRPSELNVLRLNSTRRVDEGGAKDVTIDGGHVKGSLIDKKANGSGQLYGDHDGKKKIEKPELTVVDHIGPGRIPKATEGEQVAAGWPSWLSSVAGEAIKGWIPRRANTFEKLDKIGQGTYSTVYKARDVINRKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLVTSHMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSAGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLSHSTVFRPPHHYRRCVAETFKDYPSTAVKLIETLLSIEPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYAPSKEIDAKLRDEVRRQGAVGGRDQKVASGFRQEKGHRANVTTKDNTDPGLSVQQGRYSSSKNRSELYNPHRGSVSGILVFPQKQSEDAKEREKNFSGHIYKKPSHSGPLVPGSVWAKGAKEVDDVPPVPIRGNLSKLSGLVASRTLLPEDQEDKPVQLHHRKPIEVRKSMESTNGSESRRRQEQKGIVDLNQIESKRIPTEKSTPGGRESMGNKIYLSGPLVVSSSNMDQMLKEHDRKIQEFSRRARIEKSRARGDRVRAQRKW* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00133 699 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Lapu11g00133 699 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Lapu11g00133 699 MobiDBLite consensus disorder prediction 678 699 - -
Lapu11g00133 699 MobiDBLite consensus disorder prediction 462 476 - -
Lapu11g00133 699 SUPERFAMILY Protein kinase-like (PK-like) 129 427 IPR011009 -
Lapu11g00133 699 FunFam probable serine/threonine-protein kinase At1g54610 218 458 - -
Lapu11g00133 699 CDD STKc_CDK9_like 135 419 - -
Lapu11g00133 699 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00133 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Lapu11g00133 699 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00133 699 MobiDBLite consensus disorder prediction 462 505 - -
Lapu11g00133 699 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Lapu11g00133 699 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00133 699 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Lapu11g00133 699 MobiDBLite consensus disorder prediction 584 620 - -
Lapu11g00133 699 MobiDBLite consensus disorder prediction 477 504 - -
Lapu11g00133 699 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00133 Lapu-Chr11 3649525 3656094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00133 127 461 Core Cell Cycle Gene Families AT5G10270 48.433 4.47e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu11g00133 Pkinase 1.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00133 - - gmx:100807590 1270.76