Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00130 ATGGACCAGCTTGGAATTCAACCCCCTTCAACCAAGGTTGAAAGAAGACTCGTTGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTATAACAAACTCAATTCTCTTCTCCCTAGCTATAACCCCAAGGAAGCATTACCACTGCCTGACCAAGTGGATGAGGCAATAAGCTACATCAAGAGTTTGGAGGAGAAGGTGAAGATGGCACAAGAGAAGAAAGAGAGATTACAGGGTATTAAGAAAAGATCCCATGGTTGCTTCTCCAATAACAGTGCTAATTTTGCTGCCACAAGTCTCCAAAAATCTCCACAACTTGAGATTCACGAAGTGGGTTCCTCCCTACAAGTTGTTCTTACTACTGGGATTGACCAACAGTTCATTTTCCATCAAATCATTCGAATTCTGCATCAAGAGAACATAGAGGTTGGAAGTGTAAATTCCTCACTCAATGGAGACTCGGTGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTCGGAGCCACCAAAGTAAGTGAGAGGTTGAAAAGGGTTGTGAATGGATCCATCAGTGACGAAGAAACACAACACGAATGGTTGGATTTTGATATTGGTACTGATGATGTGTGGTGTTTCTAG 627 0.4195 MDQLGIQPPSTKVERRLVEKNRRNQMKILYNKLNSLLPSYNPKEALPLPDQVDEAISYIKSLEEKVKMAQEKKERLQGIKKRSHGCFSNNSANFAATSLQKSPQLEIHEVGSSLQVVLTTGIDQQFIFHQIIRILHQENIEVGSVNSSLNGDSVLHVVHAEIPQSFLQFGATKVSERLKRVVNGSISDEETQHEWLDFDIGTDDVWCF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00130 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Lapu11g00130 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 182 - -
Lapu11g00130 208 SMART finulus 16 68 IPR011598 GO:0046983
Lapu11g00130 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 77 IPR036638 GO:0046983
Lapu11g00130 208 Coils Coil 52 82 - -
Lapu11g00130 208 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Lapu11g00130 208 Gene3D - 7 86 IPR036638 GO:0046983
Lapu11g00130 208 FunFam Transcription factor bHLH162 4 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00130 Lapu-Chr11 3606739 3607824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00130 10 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.778 3.10e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g00130 HLH 5.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00130 - - vun:114170573 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00130 11 3606739 3607824 Lapu11g00130 11 3606739 3607824 ECH