Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00122 ATGTCACTGCAGGCTCTGAAGGAAACTCTGCGACCTTGTTCAACCCAAAACCCCTCTTCCTCTTCTGCAACTACCCAAACACAGCGCAATTCAATTCTTCGCGACTACGATTCCCTCTTCCCAGTCCATAGAAAACCCCCTAAATCCTCTCTTGCCGACCAGCTTCGCCGCCTTAACGACTCACTATCCCCGTCACACTCCGAAACCCTACAGCAAGAAGAAGAAAAAGAGGCATTACTACAAGAAGAAGAACCTGAGATAGAGAGAGCGAAATTCGCTTCAGTTAAACTGCCACAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCACGTGGAGAATCTCCTGTCGTTCAGGTTCCTGCATCTATAAACTGTAGACTACTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAAACCATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGGACGTTCTACTCTAAATGAAAACCAGCTAGAGAAAAGAGACCCTGCATTAATAATATGCCCTACATCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAGTGGTCTGACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATATCTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCCTTGTCAGATGTCAAATGGAACGTTGTGATTGTCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTATAATGCAAAATAAGATAATGGAATTGTTCAATCTCTTTGACTGGGTTTCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTTAAGCATGGCCAGAGATCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGATACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATCGTGTTTTGTGCAATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGCTACAGCTGCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTGCAACAGATAAGCAATCACCTCGAGCTCATCAAACCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCACTGATATTGATTTAGTGGGTGGAAAAACACAACATGAAAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTACTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATTCGAAAAGGCTATTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGCCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAGGTATTCCTGATATCTACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGCGCAAACCGCGTTGTAATATTTGATCCTAACTGGAATCCTGCCCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCACGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTCTCAAATATTGCAGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACCAGCGAGATCATTGAATTGCATAAGGAACATGGACATGAAACGGAACAACTGGAAAAAGTAAATCTGTCAGAACAAACAGGTTCATCGGTATCGGAGTCAGAAACCAGATTATGTCATAAATCTGGAGGGGCTGCAACAAGTAAACCCGATCTTGAAGACCTTGGCATTGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGACCTGGGATTCAGGGGAAAGTAAATGCCGACATCTCATCAAATGATAGCTTAGTCAAGCCAAGCATCTCTTTGGACCATCGAAGAAAAAAACAAGAAAGGAAAGTTCCTTTAATTGATGATAGGAAGAGAGCCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCACTGGAGAGAGAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAAATGCCTAATGGTTGA 2589 0.4249 MSLQALKETLRPCSTQNPSSSSATTQTQRNSILRDYDSLFPVHRKPPKSSLADQLRRLNDSLSPSHSETLQQEEEKEALLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLLLSSRGESPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGMLGDDMGLGKTIQAIAFLAAVFGKGRSTLNENQLEKRDPALIICPTSVIHNWESEFSKWSDFSVSIYHGANRDLISDKLEANGVEILITSFDTYRIHGSSLSDVKWNVVIVDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLHKYMLRRTKEDTIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGTDIDLVGGKTQHESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEHGHETEQLEKVNLSEQTGSSVSESETRLCHKSGGAATSKPDLEDLGIVYTHRNEDIVNFGPGIQGKVNADISSNDSLVKPSISLDHRRKKQERKVPLIDDRKRAQYKLLAQSMGMGELAFSKWLLSATPLEREKVLLDYKKKKKMPNG* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00122 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 314 IPR014001 -
Lapu11g00122 862 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 113 363 - -
Lapu11g00122 862 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 523 676 IPR001650 -
Lapu11g00122 862 PANTHER SNF2/RAD54 FAMILY MEMBER 21 793 - -
Lapu11g00122 862 MobiDBLite consensus disorder prediction 1 34 - -
Lapu11g00122 862 SMART helicmild6 549 632 IPR001650 -
Lapu11g00122 862 SMART ultradead3 128 322 IPR014001 -
Lapu11g00122 862 Pfam SNF2-related domain 148 404 IPR000330 GO:0005524|GO:0140658
Lapu11g00122 862 MobiDBLite consensus disorder prediction 54 68 - -
Lapu11g00122 862 Gene3D - 111 363 IPR038718 -
Lapu11g00122 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 364 IPR027417 -
Lapu11g00122 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 687 IPR027417 -
Lapu11g00122 862 Gene3D - 376 731 IPR027417 -
Lapu11g00122 862 Pfam Helicase conserved C-terminal domain 520 632 IPR001650 -
Lapu11g00122 862 Coils Coil 70 90 - -
Lapu11g00122 862 CDD SF2_C_SNF 514 643 - -
Lapu11g00122 862 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00122 Lapu-Chr11 3507046 3513939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00122 152 662 RAD5 or RAD16-like Gene Family AT1G02670 26.391 3.07e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu11g00122 SNF2_N 2.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00122 K20098 - gmx:100781003 1505.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00122 11 3507046 3513939 Lapu11g00122 11 3507046 3513939 ECH