Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00116 ATGGAAGAAGAAGGGTTGTGCCAAAACTCAGTTCCTGGTTCTGGTTCTGTTGATAAAACTAGGATTGTAGAGGTTAAACCGCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTAAACTTGCGATCTCTGCACGGTACCCATCTGGGTTTCCTCCATTTGTTTTGTTTGAGGAACCCGAAGAGTCTCAGCCATCACCTCCTCCTATGCCAGCTCCAATAAGGTCCTTTAGGAAGCCACCAGATGAAGAAGAAACCCCTCATGGAGTCAATGGAGAAGCTTCTTCACCTATAGAGGGTGTCGATGGTAAGAATGTCGACGATAGCCCAAATCGTTCTGTGCAGCCTATGAAGAGCTGCAAATCATCCCAAAAGAGGCGTAGGAAAACTCAGGATTTTGGTTGCAGTTCTTCGGTTGGTGGTATTAGCATGGCCCAAAGGGATGATGGTGATCGGGAAATGGTTAATCTTGTGCTCATGACTTTTGATTCTCTTCGGAGAAGGCTCTGCCAACTTGAAGAGTCCAAGGAGTTGAACACAAAGATTGGAACCAAGCGCCCGGATTTAAGAGCAAGCAATGTGATGACAGACAAAGCGTTTCGCACAAACATGAGGAAGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGATATTTTCTTTTTGCGGATGGAAATGTGTCATGTGGGTTTACATGGCCAGTCAATGAGTGGAATTGACTACATGAGTGCCAAGGATGAGCTTCAGGTGGAACCGCTGGCTTTAAGCATTGTCTCATCAGGAGTGTATGATAATGATGCAGAGGATGACGATGTTTTAATTTATAGTGGTCAGGGTGAGAACTTCAACAAGAAAGACAAGCATGTGGTTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGACAGAAGTTCACACCGACAGAATGAAGTAAGAGTCATCCGGGGCTTGAAAGATGCTGGGAATAAAAATGCAAAAATCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCTTGGGTAGAAAAAGGGAAGTCTGGAGGTGGTGTATTCAAGTACAAGTTTGTTAGATTGCCTGGGCAACCTAGTGCTTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAGACAGGCTCATCTTCAAGGATTGGCCTTATTCTTGCAGACCTCTCCACAGGAGTTGAAAGTATTCCTGTATCACTTGTCAATGATGTTGATAACGAGAAGGGGCCTTCTTTTTTCACCTATTCCAGTTCTCTCAGAGATTCAAAAGCATTCAGTTTAGTGCAATCTTCATATGGCTGCAACTGTAACAAAACATGTGTCCCCGGTGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCGTATATTGCAAATGGTGTTCTAGTAAGTCGGAAACCATTAGTTCATGAGTGTGGCCCAATGTGTAAGTGCTTTCCTAACTGCAAGAATCGAGTATCGCGAACAGGTTTGAAGAACCAAATGGAAGTTTTCAAAACCAAAGATAGAGGGTGGGGACTTCGATCACTTGATCCTATACGTGCTGGTACTTTTATTTGTGAGTACGCGGGAGAAGTAATTGATAGAGCCAAGGTAAATAAGAATGGTGGGTATAATGATGAGTATGTTTTTGATACTAGTCGTATTTACAATCCATTTAAATGGAATTATGAACCTAGCTTATTGGAAGAAATAAGCCCAAATGTCTCTAGTGAGGATTATACGATACCGTCTCCTCTAATTATCAGTTCTAAAAATTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCTCCAAATGTTTTCTGGCAGCCCGTCTTGTATGCAGAAAATAATCAATACTTTCTTCACATTGCATTTTTTGCCCTTAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGATGTTCTGGTCATGCTGATGGTAGTAATGCACCCGAAGGGAGAATGAAATGCTTGTGTGGATCGTCAAAATGCTGTGGTTCTTTTGGTTGA 2013 0.4223 MEEEGLCQNSVPGSGSVDKTRIVEVKPLRSLAPVLPKSLKLAISARYPSGFPPFVLFEEPEESQPSPPPMPAPIRSFRKPPDEEETPHGVNGEASSPIEGVDGKNVDDSPNRSVQPMKSCKSSQKRRRKTQDFGCSSSVGGISMAQRDDGDREMVNLVLMTFDSLRRRLCQLEESKELNTKIGTKRPDLRASNVMTDKAFRTNMRKRVGAVPGVEIGDIFFLRMEMCHVGLHGQSMSGIDYMSAKDELQVEPLALSIVSSGVYDNDAEDDDVLIYSGQGENFNKKDKHVVDQKLQRGNLALDRSSHRQNEVRVIRGLKDAGNKNAKIYVYDGLYKIQDSWVEKGKSGGGVFKYKFVRLPGQPSAFAVWKSIQKWKTGSSSRIGLILADLSTGVESIPVSLVNDVDNEKGPSFFTYSSSLRDSKAFSLVQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYIANGVLVSRKPLVHECGPMCKCFPNCKNRVSRTGLKNQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVNKNGGYNDEYVFDTSRIYNPFKWNYEPSLLEEISPNVSSEDYTIPSPLIISSKNFGNVARYMNHSCSPNVFWQPVLYAENNQYFLHIAFFALRHIPPMTELTYDYGCSGHADGSNAPEGRMKCLCGSSKCCGSFG* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00116 670 Gene3D - 191 377 IPR036987 -
Lapu11g00116 670 ProSiteProfiles SET domain profile. 496 641 IPR001214 GO:0005515
Lapu11g00116 670 Pfam SAD/SRA domain 208 361 IPR003105 -
Lapu11g00116 670 Pfam SET domain 507 641 IPR001214 GO:0005515
Lapu11g00116 670 SMART G9a_1 204 361 IPR003105 -
Lapu11g00116 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 94 664 - -
Lapu11g00116 670 MobiDBLite consensus disorder prediction 62 76 - -
Lapu11g00116 670 SUPERFAMILY SET domain 395 667 IPR046341 -
Lapu11g00116 670 SMART preset_2 386 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu11g00116 670 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 23 670 IPR025794 GO:0016571
Lapu11g00116 670 SUPERFAMILY PUA domain-like 191 379 IPR015947 -
Lapu11g00116 670 Gene3D SET domain 378 669 IPR046341 -
Lapu11g00116 670 ProSiteProfiles Pre-SET domain profile. 432 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu11g00116 670 ProSiteProfiles Post-SET domain profile. 654 670 IPR003616 -
Lapu11g00116 670 ProSiteProfiles YDG domain profile. 209 357 IPR003105 -
Lapu11g00116 670 Pfam Pre-SET motif 390 488 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Lapu11g00116 670 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 191 376 - -
Lapu11g00116 670 SMART set_7 496 647 IPR001214 GO:0005515
Lapu11g00116 670 MobiDBLite consensus disorder prediction 58 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00116 Lapu-Chr11 3375899 3382663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00116 141 670 Su(var)3-9 homologs AT5G04940 60.788 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu11g00116 SAD_SRA 4.7e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00116 K24405 - gmx:100800651 1114.37