Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00098 ATGTCTTCCTTCAAATCTTATGGCAAAGTTGATGAATCAGAGCAAGCCATGCTTGAAGTTCGACGCAAAACGCGAAAGAGAATCACCATCATAGCCTTGTCCACAATAGTCCTCATTGGAGTTGTGTGTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAACAACAACAACTCAAATGATGGTGAAAACAATGCTCCTTCTGTTTCCAGCTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGGACGCCTGCTATAGCAGCCTTGGTTCTCTTGCACAGTCGGGTCAGGTTCGACCTGAGGACTTGTTCTTGCTGTCTATTAATGTGGCCTTACGTGAGGCTTCTAAGGCTGTTGAGTATTTCTCTGAGAATGGAGGATTCAGTGACTTGAATGTTGATAACAGGATCATGGAAGGTTTTAAGAACTGCAATGATCTTCTTGGTCTTGCGGTTGATCATCTGAATAGCTCTTTGGCTTCTGGGGGGAAGTTTTCCTTGGTTGATGTGTTGGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAAACTTGCATCGATGGCTTTGGAGAGGCAGAAGAAGCATTGAAGACCAGTGTATTCAACAATCTGAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTAACAAGGCTGCAAGCACTGTGAAACTAAGGCGCTTGTTGAGTACTTTGCCACATCAAAATGAAGAACCAAAGTGGCTTCATTCTAAAGATCGGAAGATGCTTCAAGCTGATAATTTGAAGAAGAAAGCTAATGTTGTTGTAGCAAAAGATGGCAGCGGAAATTTTAAAACAATCACTAATGCACTTAAACATGTCCCTGAAAAAAGTGACAAGAGGACTGTGATCTATGTGAAGAAGGGGATTTACAATGAAAATGTGAGGGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCCACCATTGTATCTGGAAGCCTTAATTTTGTGGATGGCACCCCAACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAAGACAGTCTCTATGCTCATTCCAACCGCCAATTCTACAGGGAATGTAACATTTATGGCACTGTTGATTTCATTTTTGGCAATTCAGCAGTTGTCCTCCAAAACTGCAACATTTCGCCAAGGGTGCCTATGCAGGGTCAATTAATTTATTTGAGGCTTCGTTTGAAGATCTTGGACCTACTAGAGGCATTACACCTCTTATGA 1389 0.4269 MSSFKSYGKVDESEQAMLEVRRKTRKRITIIALSTIVLIGVVCAAVFGTVAHNNNNNNSNDGENNAPSVSSSVKAVCDVTLYKDACYSSLGSLAQSGQVRPEDLFLLSINVALREASKAVEYFSENGGFSDLNVDNRIMEGFKNCNDLLGLAVDHLNSSLASGGKFSLVDVLEDLRTWLSAAGTYQQTCIDGFGEAEEALKTSVFNNLKNSTEFTSNSLAIVTWLNKAASTVKLRRLLSTLPHQNEEPKWLHSKDRKMLQADNLKKKANVVVAKDGSGNFKTITNALKHVPEKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNISPRVPMQGQLIYLRLRLKILDLLEALHLL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00098 462 SMART PMEI_2 68 221 IPR006501 GO:0004857
Lapu11g00098 462 CDD PMEI-like_3 75 227 - -
Lapu11g00098 462 FunFam Pectinesterase 69 226 - -
Lapu11g00098 462 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 227 IPR035513 -
Lapu11g00098 462 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Lapu11g00098 462 Gene3D - 264 447 IPR012334 -
Lapu11g00098 462 Pfam Pectinesterase 269 443 IPR000070 GO:0030599|GO:0042545
Lapu11g00098 462 SUPERFAMILY Pectin lyase-like 267 446 IPR011050 -
Lapu11g00098 462 PANTHER PECTINESTERASE 39 442 - -
Lapu11g00098 462 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Lapu11g00098 462 FunFam Putative pectinesterase 57 266 449 - -
Lapu11g00098 462 NCBIfam pectinesterase inhibitor domain 69 225 IPR006501 GO:0004857
Lapu11g00098 462 Pfam Plant invertase/pectin methylesterase inhibitor 72 221 IPR006501 GO:0004857
Lapu11g00098 462 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 225 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00098 Lapu-Chr11 3103547 3106707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00098 1 442 Carbohydrate Esterase AT3G10710 54.054 1.13e-165 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00098 - - pvu:PHAVU_011G1890000 761.911