Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00088 ATGGGGTATGAAACTAGAATACTCTCAGATGAGTATGAAGTGTCAGAAGTTCTAGGAAGAGGTGGATTCTCGGTTGTCAGAAAAGGCATAAGAAAATCAAGCAGTGACACCAAAAGCCATGTAGCCATCAAAACCCTGAGAAGGTCAGGCACTGCCTCAAACTCCAACTACCCTTCTGGTTTTCCAAGACCAAAGGTTGGAGAGAAGAGCACAGCAGCTATGATGGGGTTCCCCTCATGGAGGCAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCACACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGCGGGGAATTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTGCACAGAGACTTGAAGCCAGAAAATTGTCTTTTTTTGGATGTGAGGAGGGACTCTCCTCTTAAGATCATGGACTTTGGTTTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGTGATTCTATATATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGTCTAATCGCCAGAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACATGGAAAGGCATTACTCAATCAGCAAAGCAACTAATTTCAGATCTCCTGACTGTAGATCCTAGCAGGAGACCAAGTGCTCAAGATGTTCTGAGTCATCCATGGGTGGTAGGTGACAAAGCAAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCAGCACAATCTTCCTCAGAACCAAAAGGCTGAAATCCTTGGTGGGAACACACGATCTCACACAAGAGGAAATTGAAAACCTCAGGATGAATTTTAAGAAAATATGTGTGAGTGGAGACAATGCCACTCTATCTGAGTTTGAAGAGGTGCTGAAAGCCATGAATATGCCATCACTGATCCCTCTGTCATCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGCTTTACCAGAAGAGTGTCTGCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGAGAGATAGCTCTCTTCAAGACCTTCTTCTCTCTTCCCTAAGACCACAACCCTAG 1443 0.4387 MGYETRILSDEYEVSEVLGRGGFSVVRKGIRKSSSDTKSHVAIKTLRRSGTASNSNYPSGFPRPKVGEKSTAAMMGFPSWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGITQSAKQLISDLLTVDPSRRPSAQDVLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKRLKSLVGTHDLTQEEIENLRMNFKKICVSGDNATLSEFEEVLKAMNMPSLIPLSSRIFDLFDNNRDGTALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDLLLSSLRPQP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00088 480 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 76 134 - -
Lapu11g00088 480 Gene3D Phosphorylase Kinase; domain 1 70 135 - -
Lapu11g00088 480 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 135 325 - -
Lapu11g00088 480 SMART serkin_6 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00088 480 SUPERFAMILY EF-hand 353 471 IPR011992 -
Lapu11g00088 480 Pfam EF hand 437 464 IPR002048 GO:0005509
Lapu11g00088 480 Gene3D - 426 464 - -
Lapu11g00088 480 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 458 - -
Lapu11g00088 480 CDD STKc_CAMK 12 307 - -
Lapu11g00088 480 ProSiteProfiles Protein kinase domain profile. 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00088 480 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Lapu11g00088 480 SUPERFAMILY Protein kinase-like (PK-like) 4 325 IPR011009 -
Lapu11g00088 480 Pfam Protein kinase domain 90 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g00088 480 CDD EFh 409 463 IPR002048 GO:0005509
Lapu11g00088 480 Gene3D - 349 425 - -
Lapu11g00088 480 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Lapu11g00088 480 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Lapu11g00088 480 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Lapu11g00088 480 Gene3D Phosphorylase Kinase; domain 1 9 57 - -
Lapu11g00088 480 Gene3D Transferase(Phosphotransferase) domain 1 136 348 - -
Lapu11g00088 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lapu11g00088 480 SMART efh_1 437 465 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00088 Lapu-Chr11 2958023 2962985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00088 3 464 EF-hand Containing Proteins AT5G23580 33.061 1.29e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Lapu11g00088 Pkinase 4.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00088 K13412 - gmx:732616 842.032