Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00083 ATGAAGAGGTCTCCAGCTTCTTCTTGTTCATCATCTTCTTCCTCTGTTGGGTTTGAAGCTCCCATTGCTCAGCAAGTGAAAAGAAGGCCTAATAATTATCCAAGGAGGAATAACTTGATGCCACAAAAGTGCACGCAGAGCCAAACCACAGGCAGAAGAAGCTCTATCTATAGAGGAGTTACAAGACATAGGTGGACAGGTAGGTTTGAAGCTCACCTATGGGATAAGAGCTCTTGGAACAACATTCAGAGCAAGAAGGGTAGACAAGTTTATTTGGGAGCATATGATACTGAAGAAGCTGCAGCCCGTACCTATGATCTTGCAGCCCTGAAGTACTGGGGAAAGGAAGCAGTTTTGAATTTTCCGATAGGAAATTATACAAAGGATCTTGAGGAAATGGACAAAGTTTCAAAAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGGCGTTGGGAAGCACGCATTGGAAGAGTTTGTGGAAACAAGTACCTCTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCTGTGGCATATGACCTAGCAGCAATAGAGTACAGAGGTCCCAATGCAGTGACCAATTTTGATATAAACAACTACATTGACAAAGAGAAGAAAAAGGACCAAACCCAACAAACAGAAGCACAAACAGAAACAGTTCCTAACTCCTCAGACTCTGAAGAAGCAGAAGTAGAACAACAGACAACTGCACCACCCCCTTCTGAAAATCTGCACATGCCACCACAGCAGCACCAAGTTCAACACACACCCATTGTCTGTCCTAGGGAAGAATCATCATCACTGGTCACTATTATGGACCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTATACTGGGGTGTCTCAGTTTCAAGATCCAGACTTTGCTTTCAGCAAAGCTGATGATTTAGTAGGCATGTTTGATGGTTCAGGATTTGAGGAAGACATTGATTTTCTGTTTAGCACAGAGCCTAGTAAGACTGGGAGTGATATCAATATGAGTGCAGTTTTGGATAGTACTGAATATGGAGACACAAATCGAGCTGGTGGAAACAAGGTGCAAGGGGATAACAAGCAGAGGGAGATACTATCATTTGCATCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTACTCTAGATTTATGA 1218 0.4286 MKRSPASSCSSSSSSVGFEAPIAQQVKRRPNNYPRRNNLMPQKCTQSQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQVYLGAYDTEEAAARTYDLAALKYWGKEAVLNFPIGNYTKDLEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDLAAIEYRGPNAVTNFDINNYIDKEKKKDQTQQTEAQTETVPNSSDSEEAEVEQQTTAPPPSENLHMPPQQHQVQHTPIVCPREESSSLVTIMDHVLEQDLPWSFMYTGVSQFQDPDFAFSKADDLVGMFDGSGFEEDIDFLFSTEPSKTGSDINMSAVLDSTEYGDTNRAGGNKVQGDNKQREILSFASSSPSSTTTTVSCTLDL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00083 405 MobiDBLite consensus disorder prediction 385 405 - -
Lapu11g00083 405 MobiDBLite consensus disorder prediction 20 53 - -
Lapu11g00083 405 MobiDBLite consensus disorder prediction 233 276 - -
Lapu11g00083 405 SUPERFAMILY DNA-binding domain 55 123 IPR016177 GO:0003677
Lapu11g00083 405 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 Pfam AP2 domain 56 114 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 MobiDBLite consensus disorder prediction 224 276 - -
Lapu11g00083 405 SMART rav1_2 56 128 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 CDD AP2 157 218 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 272 - -
Lapu11g00083 405 FunFam AP2-like ethylene-responsive transcription factor 55 124 - -
Lapu11g00083 405 MobiDBLite consensus disorder prediction 30 53 - -
Lapu11g00083 405 Gene3D AP2/ERF domain 56 124 IPR036955 GO:0003700|GO:0006355
Lapu11g00083 405 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700|GO:0006355
Lapu11g00083 405 FunFam AP2-like ethylene-responsive transcription factor 157 218 - -
Lapu11g00083 405 CDD AP2 55 123 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 ProSiteProfiles AP2/ERF domain profile. 56 122 IPR001471 GO:0003700|GO:0006355
Lapu11g00083 405 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00083 Lapu-Chr11 2910853 2917642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00083 41 220 AP2-EREBP Transcription Factor Family AT5G57390 68.333 5.78e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu11g00083 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00083 - - gmx:100527432 603.594