Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00041 ATGTCATTTTCCCGTGGCCAGAAGTTTTTCAAGAGGTTCTGTGTTGATGAATTCCAAATGGCAAGTCTTCCGTATAGCAGTTTTCTGTCTAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGGCTTAGAAGACGCACAGTTTCCCCTTTCGATCCACGTTATAGGGCGTGGGAGATGCTACTGATTGTGCTTGTTGTCTACTCTGCATGGATTTGCCCCTTTGAGTTTGCCTTTCTGCCTGAGAAGCAAGACACACTATTCATCATAGACAACACTGTCAATGCCTTCTTTGCCATTGACATCGTGCTCACATTCTTTGTTGCATATCTTGATAACCATTCCTACCTTCTTGTTGATGATCCAAAGAAAATTGCATTAAGGTACATATCTACCTGGTTTATCTTTGATGTCTGTTCAACTGCACCATTTCAATCCATCAGCCTCCTATTCACTAATCACAGCAGTGAAATTGGGTTCAAAATTCTGAACATGCTTCGGTTGTGGCGTCTGAGACGTGTCAGTTCTCTGTTTTCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACTAGGTGCTCCAAGCTCATTGCTGTGACATTGTTTGTTGTGCACTGTGCTGGATGCTTCAACTATCTGATTGCAGATAGGTACCCTGATGCCAGATCAACATGGATTGGTTCTGTGTATCCAAATTTCAAAAAAATGAGTCTCTGGGACAAATATGTGATTGCCTTGTATTGGTCCATTGTGACACTTACTACCACTGGCTATGGAGACTTGCATCCTGTAAACACAAGGGAGATGCTCTTTGACATCTTCTACATGTTGTTCAACTTGGGATTAACTTCATACATCATTGGAAACATGACAAACCTAGTAGTTCATTGGACAAGTCGCACCAGAAATTTTAGGGACACAGTGAGAGCAGCTTCAGAATTTGCATCAAGAAACCATCTGCCACATCACATACAGGAACAGATGTTGTCACACTTGTGTTTGAAGTTCAAGACAGAAGGATTGAAGCAGCAAGAGACACTGAATGGCATGCCAAAGGCAATTCGTGCAAGCATTTCTTACCATCTATTTTTTGCTTTTCTGCAGAAGCTCTACCTCTTCCAAGGAGTTTCAGATGACTTTCTTTTCCAACTGGTTACAGAGATGGAGGCTGAGTATTTCCCACCAAAGGAAGATGTGATACTACAAAATGAGTCTCCCACAGACCTCTACATGCTGGTTTCAGGGGCAGTGGATCTCATTCGCAATGTTGATGGCAATGATCAAGTTGTGAAGAAGGCTAATGCATGGGACACATTTGGGGAGATTGGAGTGTTGTACAGTAGACCACAGCCTTTCACTGTTCGGACCACTGAACTATCTCAAATTTTAAGACTCAGCAGAACATCCTTAATGAACTCCTTACATGCATATCCAGAAGCTGCACAAATCATTATGAAAAATATCTTCATGAGGTTAAAGGGGCATGAAGGCTTGGATTTTGAATTTTCACCAAGGGACCCCCAAATGCATGATTGGGACAACACAAGAGGAAGTTTTCCTGATTCATCTGCATATAATTCTCATGGGGAAACCAGATTGCAAAACTTGGTTCCTGAGGATGGAAAAGGAGATATTCATGCTACTTTTCAGAAAGATCATCCTGACATGGAAGAAAATGAAGAGAACCAGGGCCATATAAGATGGAAACAGAAGCCTCTTGTAGAGCAGCAACAAAACAAGAGCCTTTCTGACCTCGCAAGGAACCATAAAAATAGGAAGATATTAGATGAACATATTATAGAGTTTTTGGAGCCAGAAATCCCTATCAACTACCCTTTAGGAAAAATATACTCAAACTCTTATTCAAGTACTTCTAACCATAGAACTGAGAGAGAAACAAAAAGATTCTTCAAAAAGAGAGTTACCATCCATTTTCTAAGCAAACACAAAACTACCTCACAGGAACATGGCAAGTTGATAACACTACCTGATTCATTGGAAGAGCTGCTCCATATTGCTGGAGAAAAATTTGGAGGCTCCAAGATTACAAAAGTATTTACCACAGAGAATGCAGAGATAGATGATATCAGTGTCATTCGAGATGGGGATCATCTAGTTTTTCTTTGCAGTGACACTGAAAATTTGAGTGCATAA 2169 0.4089 MSFSRGQKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRRTVSPFDPRYRAWEMLLIVLVVYSAWICPFEFAFLPEKQDTLFIIDNTVNAFFAIDIVLTFFVAYLDNHSYLLVDDPKKIALRYISTWFIFDVCSTAPFQSISLLFTNHSSEIGFKILNMLRLWRLRRVSSLFSRLEKDIRFNYFWTRCSKLIAVTLFVVHCAGCFNYLIADRYPDARSTWIGSVYPNFKKMSLWDKYVIALYWSIVTLTTTGYGDLHPVNTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQEQMLSHLCLKFKTEGLKQQETLNGMPKAIRASISYHLFFAFLQKLYLFQGVSDDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRNVDGNDQVVKKANAWDTFGEIGVLYSRPQPFTVRTTELSQILRLSRTSLMNSLHAYPEAAQIIMKNIFMRLKGHEGLDFEFSPRDPQMHDWDNTRGSFPDSSAYNSHGETRLQNLVPEDGKGDIHATFQKDHPDMEENEENQGHIRWKQKPLVEQQQNKSLSDLARNHKNRKILDEHIIEFLEPEIPINYPLGKIYSNSYSSTSNHRTERETKRFFKKRVTIHFLSKHKTTSQEHGKLITLPDSLEELLHIAGEKFGGSKITKVFTTENAEIDDISVIRDGDHLVFLCSDTENLSA* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00041 722 Pfam KHA, dimerisation domain of potassium ion channel 644 712 IPR021789 -
Lapu11g00041 722 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu11g00041 722 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu11g00041 722 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu11g00041 722 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu11g00041 722 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu11g00041 722 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu11g00041 722 SMART cnmp_10 377 494 IPR000595 -
Lapu11g00041 722 Gene3D - 60 300 - -
Lapu11g00041 722 PANTHER POTASSIUM CHANNEL AKT1 26 500 IPR045319 GO:0005249|GO:0006813
Lapu11g00041 722 Gene3D Jelly Rolls 344 505 IPR014710 -
Lapu11g00041 722 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Lapu11g00041 722 Pfam Cyclic nucleotide-binding domain 397 477 IPR000595 -
Lapu11g00041 722 FunFam Potassium channel KAT3 61 301 - -
Lapu11g00041 722 FunFam Potassium channel KAT2 365 501 - -
Lapu11g00041 722 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu11g00041 722 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Lapu11g00041 722 CDD CAP_ED 377 490 IPR000595 -
Lapu11g00041 722 ProSiteProfiles KHA domain profile. 645 722 IPR021789 -
Lapu11g00041 722 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00041 Lapu-Chr11 1835510 1841958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00041 1 712 Ion Channels AT5G46240 59.945 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00041 K21867 - gmx:100800340 1276.54