Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00012 ATGGAAAACCACATCTACTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGAGACCCCGACCCTTCCACCATGTTCCTCTCCCACCACCACCACCACCGCTCCGCCGACTCCGCCGCCCTCCGCTTCCCCTCCTCCCTCACCGACGACATTGCCCCTCCCGGCGTCACCTCCCGCATCGCCTCCTCCTCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCACCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCCGACGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCACTAGATACGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCGAAGTGCAAATTTAATCATCCTAAGGTTTCCTCTGACAATGATGATGTATCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCACGTTCTACATGAAAACTGGAAAATGTAAATTTGGTTCTGCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTTTTCTGACGAGTTGAGTCATTCTGCTGCACAGACAGAAACAAGTTCTATGATAGGAGTACCTGGAGATACACAGCCAATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGACTGGGGGAAGTGGACTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCAACTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCTACCCATTTCTGGATTAGGCCCTTCTATTTTGTCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTTTATCAAACTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGCCAGATTGAATGTGATTTTTACATGAAAACTGGCGAGTGTAAATTCGGGGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGTACCATCGCTGTCGAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCTGTTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCACAAGGAACATCAACCGATGGAGGGGAAGCAGAAGACTGTTAA 1458 0.4801 MENHIYSSYSPSTNYRFRDPDPSTMFLSHHHHHRSADSAALRFPSSLTDDIAPPGVTSRIASSSAANYLSPWASTAATSSLDFKRSSDALYHPTILGTIGQSEAWYSTNSLAKRTRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSDNDDVSSGLPERPSEPPCTFYMKTGKCKFGSACKFHHPKDIQIQFSDELSHSAAQTETSSMIGVPGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINLPISGLGPSILSSSAASLNIGLLSPAVSVYQTFDPRLSNPMSQVGIAETIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSVPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSTDGGEAEDC* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00012 485 FunFam Zinc finger CCCH domain-containing protein 37 167 214 - -
Lapu11g00012 485 Gene3D - 221 332 - -
Lapu11g00012 485 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Lapu11g00012 485 FunFam Zinc finger CCCH domain-containing protein 37 88 166 - -
Lapu11g00012 485 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Lapu11g00012 485 FunFam zinc finger CCCH domain-containing protein 37 383 476 - -
Lapu11g00012 485 Gene3D - 384 477 - -
Lapu11g00012 485 SUPERFAMILY CCCH zinc finger 186 207 IPR036855 GO:0046872
Lapu11g00012 485 SUPERFAMILY CCCH zinc finger 439 462 IPR036855 GO:0046872
Lapu11g00012 485 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Lapu11g00012 485 SUPERFAMILY CCCH zinc finger 129 156 IPR036855 GO:0046872
Lapu11g00012 485 Gene3D - 167 215 - -
Lapu11g00012 485 Gene3D - 87 166 - -
Lapu11g00012 485 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Lapu11g00012 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 208 IPR000571 GO:0046872
Lapu11g00012 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 439 462 IPR000571 GO:0046872
Lapu11g00012 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 155 IPR000571 GO:0046872
Lapu11g00012 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 411 IPR000571 GO:0046872
Lapu11g00012 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 250 IPR000571 GO:0046872
Lapu11g00012 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Lapu11g00012 485 SUPERFAMILY CCCH zinc finger 227 251 IPR036855 GO:0046872
Lapu11g00012 485 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Lapu11g00012 485 PANTHER PROTEIN PHOSPHATASE RELATED 288 472 - -
Lapu11g00012 485 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Lapu11g00012 485 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Lapu11g00012 485 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Lapu11g00012 485 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Lapu11g00012 485 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Lapu11g00012 485 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Lapu11g00012 485 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Lapu11g00012 485 SUPERFAMILY CCCH zinc finger 387 413 IPR036855 GO:0046872
Lapu11g00012 485 SUPERFAMILY CCCH zinc finger 303 326 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00012 Lapu-Chr11 583439 599032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00012 284 474 C2H2 Transcription Factor Family AT3G02830 32.984 2.13e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu11g00012 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00012 - - pvu:PHAVU_011G180700g 930.243