Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g00012 | ATGGAAAACCACATCTACTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGAGACCCCGACCCTTCCACCATGTTCCTCTCCCACCACCACCACCACCGCTCCGCCGACTCCGCCGCCCTCCGCTTCCCCTCCTCCCTCACCGACGACATTGCCCCTCCCGGCGTCACCTCCCGCATCGCCTCCTCCTCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCACCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCCGACGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCACTAGATACGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCGAAGTGCAAATTTAATCATCCTAAGGTTTCCTCTGACAATGATGATGTATCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCACGTTCTACATGAAAACTGGAAAATGTAAATTTGGTTCTGCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTTTTCTGACGAGTTGAGTCATTCTGCTGCACAGACAGAAACAAGTTCTATGATAGGAGTACCTGGAGATACACAGCCAATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGACTGGGGGAAGTGGACTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCAACTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCTACCCATTTCTGGATTAGGCCCTTCTATTTTGTCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTTTATCAAACTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGCCAGATTGAATGTGATTTTTACATGAAAACTGGCGAGTGTAAATTCGGGGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGTACCATCGCTGTCGAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCTGTTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCACAAGGAACATCAACCGATGGAGGGGAAGCAGAAGACTGTTAA | 1458 | 0.4801 | MENHIYSSYSPSTNYRFRDPDPSTMFLSHHHHHRSADSAALRFPSSLTDDIAPPGVTSRIASSSAANYLSPWASTAATSSLDFKRSSDALYHPTILGTIGQSEAWYSTNSLAKRTRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSDNDDVSSGLPERPSEPPCTFYMKTGKCKFGSACKFHHPKDIQIQFSDELSHSAAQTETSSMIGVPGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINLPISGLGPSILSSSAASLNIGLLSPAVSVYQTFDPRLSNPMSQVGIAETIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSVPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSTDGGEAEDC* | 486 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g00012 | 485 | FunFam | Zinc finger CCCH domain-containing protein 37 | 167 | 214 | - | - | |
Lapu11g00012 | 485 | Gene3D | - | 221 | 332 | - | - | |
Lapu11g00012 | 485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 223 | 251 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | FunFam | Zinc finger CCCH domain-containing protein 37 | 88 | 166 | - | - | |
Lapu11g00012 | 485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 299 | 327 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | FunFam | zinc finger CCCH domain-containing protein 37 | 383 | 476 | - | - | |
Lapu11g00012 | 485 | Gene3D | - | 384 | 477 | - | - | |
Lapu11g00012 | 485 | SUPERFAMILY | CCCH zinc finger | 186 | 207 | IPR036855 | GO:0046872 | |
Lapu11g00012 | 485 | SUPERFAMILY | CCCH zinc finger | 439 | 462 | IPR036855 | GO:0046872 | |
Lapu11g00012 | 485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 157 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SUPERFAMILY | CCCH zinc finger | 129 | 156 | IPR036855 | GO:0046872 | |
Lapu11g00012 | 485 | Gene3D | - | 167 | 215 | - | - | |
Lapu11g00012 | 485 | Gene3D | - | 87 | 166 | - | - | |
Lapu11g00012 | 485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 435 | 463 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 183 | 208 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 439 | 462 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 131 | 155 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 388 | 411 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 226 | 250 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 325 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SUPERFAMILY | CCCH zinc finger | 227 | 251 | IPR036855 | GO:0046872 | |
Lapu11g00012 | 485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 385 | 413 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | PANTHER | PROTEIN PHOSPHATASE RELATED | 288 | 472 | - | - | |
Lapu11g00012 | 485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 181 | 209 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SMART | c3hfinal6 | 181 | 208 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SMART | c3hfinal6 | 223 | 250 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SMART | c3hfinal6 | 299 | 326 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SMART | c3hfinal6 | 129 | 156 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SMART | c3hfinal6 | 385 | 412 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SMART | c3hfinal6 | 435 | 462 | IPR000571 | GO:0046872 | |
Lapu11g00012 | 485 | SUPERFAMILY | CCCH zinc finger | 387 | 413 | IPR036855 | GO:0046872 | |
Lapu11g00012 | 485 | SUPERFAMILY | CCCH zinc finger | 303 | 326 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g00012 | Lapu-Chr11 | 583439 | 599032 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g00012 | 284 | 474 | C2H2 Transcription Factor Family | AT3G02830 | 32.984 | 2.13e-28 | 114 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Lapu11g00012 | zf-CCCH | 1.5e-10 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g00012 | - | - | pvu:PHAVU_011G180700g | 930.243 |