Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01532 ATGGCGGTGACTCTACACACAAACCTTGGGGACATCAAGTGCGAAATCTTCTGCGACGAGGTTTCCAAAACCTCCGAGAACTTTTTAGCGCTGTGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCCACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAATGATGAGATACGAGAATCACTGAAGCATAATGCAAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAATTCTTTATAACTTACGCAAAACAGCCACATTTAAATGGGCTATACACTGTGTTTGGAAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCAAACTGGGACAGGAGATCGACCACTTGCAGAGATAAGGCTCAATCGTGTAACAATACATGCTAATCCTCTAGCTGGTTGA 483 0.4224 MAVTLHTNLGDIKCEIFCDEVSKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGTGDRPLAEIRLNRVTIHANPLAG* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01532 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Lapu10g01532 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Lapu10g01532 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Lapu10g01532 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Lapu10g01532 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Lapu10g01532 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Lapu10g01532 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Lapu10g01532 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Lapu10g01532 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Lapu10g01532 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Lapu10g01532 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 153 IPR044666 -
Lapu10g01532 160 Gene3D - 1 160 IPR029000 -
Lapu10g01532 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Lapu10g01532 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 153 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01532 Lapu-Chr10 26492336 26497203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01532 3 157 U-box Gene Family AT5G67530 52.258 6.15e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01532 K12734 - gmx:100306466 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g01532 10 26492336 26497203 Lapu10g01532 10 26492336 26497203 ECH