Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01529 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCCCCTTTTCTCACTAGAGATGTTCACTTACACCCTCACCACCAATTTCAGCCCCACCACAACCATCAAAACATGGAGGATGAAGCCTCCAATGGCCGCGGCCAGAAGCGAGATCGCGACGAGAACGCCGGCGGCGGAGGTGGGGTCACTACACCCCCGCACGCCGGCGGAGAAGGCCAGGAACCCGGGTCAGGAGATGGAGGAGGGAGTGAAATGGCGAGAAGGCCGAGAGGAAGACCTGCAGGGTCCAAAAACAAGCCCAAACCTCCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACCGCTTTCGCTAGGCGGCGACAGCGTGGTGTTTGTGTGCTCAGCGGCAGCGGCACCGTCACCAACGTCACCCTCCGACAGCCAGCTTCACCTGGTGCCGTTGTGACCCTTCATGGAAGGTTCGAGATTCTATCCCTGTCCGGTTCATTCCTGCCACCGCCGGCTCCACCAGCGGCGTCAGGACTAGCCATATACCTTGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTTGTGGCTTCCGGTCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAACTCCGGTAGCAGTTCCTGGCACCGGAGGATTAGGTTCGCCGGGAATTGCAGGGACTCAGCAACAATCGCAATCGCAGCCGCAACAGCAACAACAGCTTGTGGGAGATCCTAACAGTTCTTCTCTCTTCCATGGAGTTCCTCAGAATCTTCTCAATTCGGTTCAATTACCGGCTGAGGGTTATTGGGGTGGCAGTGCTCGCCCTCCTTTTTAA 930 0.5677 MDPVAAQGRPLPPPFLTRDVHLHPHHQFQPHHNHQNMEDEASNGRGQKRDRDENAGGGGGVTTPPHAGGEGQEPGSGDGGGSEMARRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVAVPGTGGLGSPGIAGTQQQSQSQPQQQQQLVGDPNSSSLFHGVPQNLLNSVQLPAEGYWGGSARPPF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01529 309 MobiDBLite consensus disorder prediction 19 55 - -
Lapu10g01529 309 Gene3D - 113 242 - -
Lapu10g01529 309 ProSiteProfiles PPC domain profile profile. 110 246 IPR005175 -
Lapu10g01529 309 CDD DUF296 114 225 IPR005175 -
Lapu10g01529 309 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 226 IPR005175 -
Lapu10g01529 309 PIRSF ESCAROLA 15 309 IPR014476 GO:0003680
Lapu10g01529 309 MobiDBLite consensus disorder prediction 253 285 - -
Lapu10g01529 309 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 245 - -
Lapu10g01529 309 FunFam AT-hook motif nuclear-localized protein 113 240 - -
Lapu10g01529 309 MobiDBLite consensus disorder prediction 239 285 - -
Lapu10g01529 309 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 290 IPR014476 GO:0003680
Lapu10g01529 309 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01529 Lapu-Chr10 26414160 26415089 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01529 1 309 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.526 2.09e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01529 - - gmx:100816243 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g01529 10 26414160 26415089 Lapu10g01529 10 26414160 26415089 ECH