Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01524 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCATATCACGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGCGGCGCCATTGGTGGTTCTGTAGCTATTGGTGTCTCACCGGTGAGTGTGGGGTTGGATGGAACAGCAAAGAAGAAACGGGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCACCATCTTCTAATGATTTTTCCTCCGGCAAGCGGGGGAAAATGCGGGGTATGGAGTATAAGCAGTCGAAAAAACTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCACACATCATCACTGTCAATGCTGGTGAGGACATTACAATGAAGGTGATATCTTTTTCTCAACAAGGGCCAAGAGCTATATGTATCTTATCTGCTAATGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCGTCTGGGGGTACTTTAACTTATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGTTCAAGAAGCAGGTCTGGTGGAATGTCTGTGTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGCGGTGGAGTTGCTGGTCTTCTCGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAACTAAAGAAGCCCAAGTCTACTGATTATGCAGCAGCCCCTGTTAGTCCAGTTATTGCAGTGTCTCCTGCACCACCACCACCGCCACCACCACCACCTCCAACCAATGCTGAGAAAGAGGATGTGAATATTAATGTAATGAGTGGAGCACATGTGCTGCAAAATTCTGGTACTCTTAACTCTAACCTCAGTCCTCCCAGTGCCTTTAGAAGAGACAACTGGGTCAACATGCACTCTATGCCAGACTCAAGAAAGGCAGCTACTGATATAAACATATCTTTGCCTGATTGTTAA 1065 0.4723 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGAIGGSVAIGVSPVSVGLDGTAKKKRGRPRKYGPDGSVTMALSPMPISSSAPSSNDFSSGKRGKMRGMEYKQSKKLGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKPKSTDYAAAPVSPVIAVSPAPPPPPPPPPPTNAEKEDVNINVMSGAHVLQNSGTLNSNLSPPSAFRRDNWVNMHSMPDSRKAATDINISLPDC* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01524 354 MobiDBLite consensus disorder prediction 276 296 - -
Lapu10g01524 354 MobiDBLite consensus disorder prediction 59 105 - -
Lapu10g01524 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 254 - -
Lapu10g01524 354 CDD DUF296 136 226 IPR005175 -
Lapu10g01524 354 Gene3D - 136 267 - -
Lapu10g01524 354 FunFam AT-hook motif nuclear-localized protein 1-like 136 267 - -
Lapu10g01524 354 ProSiteProfiles PPC domain profile profile. 131 273 IPR005175 -
Lapu10g01524 354 MobiDBLite consensus disorder prediction 276 294 - -
Lapu10g01524 354 MobiDBLite consensus disorder prediction 83 101 - -
Lapu10g01524 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Lapu10g01524 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 317 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01524 Lapu-Chr10 26247461 26253930 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01524 1 275 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.960 5.97e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01524 - - gmx:100793726 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g01524 10 26247461 26253930 Lapu10g01524 10 26247461 26253930 ECH
Lapu1g01654 1 29435392 29439921 Lapu10g01524 10 26247461 26253930 PCT