Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01450 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTTCATTGCAATTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCTCCAGTTTGTTTAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGCGGCCTGCTTCTTCCTTCAGCTAATCAGATTCACCTTGGCCACACCTTCTTCACTCCTCAGAATCTTCTGGAGGAGATTCGTAATGCACCTTCAACAAACATGGTGATGAATCAGCTGCCAAACCCTAATGATTTGGTCATGAGCACCATGCGAGGAGGGCCTGAAGAAACCCCTAAGCCTCCATCAGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAACCCTGATATAAGTCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATCCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAAGACGTGCTTATCAAAGATGGGTTTTTCGCACCTGCTAATGTAGGTGTCTCTCCCTTCTAG 648 0.4815 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQIHLGHTFFTPQNLLEEIRNAPSTNMVMNQLPNPNDLVMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLIKDGFFAPANVGVSPF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01450 215 CDD HMG-box_SF 133 169 - -
Lapu10g01450 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Lapu10g01450 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Lapu10g01450 215 PANTHER PROTEIN YABBY 6-RELATED 1 191 IPR006780 GO:0007275
Lapu10g01450 215 MobiDBLite consensus disorder prediction 110 133 - -
Lapu10g01450 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Lapu10g01450 215 FunFam Axial regulator YABBY 124 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01450 Lapu-Chr10 23103400 23106369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01450 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 63.636 6.29e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu10g01450 YABBY 9.1e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01450 K25796 - gmx:100781267 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g01450 10 23103400 23106369 Lapu10g01450 10 23103400 23106369 ECH