Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01444 ATGGCATCATCATCATCATCATCATCTTCATTTTCCTTGGTAATAACAACCCTTCTACTTGTTCCTTTTCTATTTTCCTCCATTGTATTCTCTTACTCATTCAAAGATATTCAATCATGGTGCAACCAAACCCCTTATCCTCAACCTTGTGAGTACTACTTGACCAACCATGCCTTCAACAAACCCATCAAAAGCAAATCTGATTTCCTCAAAGTTTCCCTCCAACTTGCCCTAGAGAGAGCCCAAAGGGGCGAGCTAAACACACACTCCATAGGGCCAAAGTGCCGCAACGTCCATGAAAAATCTGCATGGACCGATTGCGTTGAACTCTACGAGTACACCATCCAAAGGCTCAACAGAACCCTTGATCCCTACACCAAGTGCACCCAAACCGACACACAGACATGGCTCAGCACAGCCCTCACAAACCTCGAAACATGCAGAGCCGGGTTCTATGAACTTGGTGTCCCAGATTACGTACTACCCTTGTTGTCCAATAATGTCACAAAGTTGTTGAGCAACACCCTCTCTCTCAACAAGGATTCCAATTACCAATTCAAACCACCAAGTAGCAAAGAGGGGTTCCCTACATGGGTTAAGCCTGGTGATAGAAAGCTGTTGCAATCATCTTCAGCAGCTTCCAAAGCTAATGTGGTTGTGGCCAAAGATGGTTCTGGAAAGTACACAACAGTGAAAGCTGCTGTTGATGCTGCTCCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGCGTGTACAATGAACAAGTTGAGGTCAAATCAAAGAATATAATGTTGGTTGGAGATGGTATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCTCCACAACCTTCCGTTCAGCCACTGTTGCTGCTGTGGGTGATGGATTTATTGCTCAAGACATCACATTCAGGAACACTGCAGGAGCAGCAAATCACCAAGCAGTGGCATTTCGTTCTGGCTCAGATCTCTCAGTATTCTACAGATGCAGTTTTGAGGGTTATCAAGACACATTATATGTTCATTCTGAGAGACAATTCTACAGAGAATGTGACATCTATGGCACAGTGGACTTCATCTTTGGCAATGCTGCTGTGGTGTTACAAAACTGCAACATCTATGCAAGAACCCCTCCTCAGAGAACCATCACAGTCACAGCTCAGGGCAGAACTGACCCTAACCAAAACACTGGAATCATCATCCACAACTCCAAGGTCACTGGTGCCTCAGGCTTCAACCCTAGTTCTGTGAAATCATACCTTGGCAGACCCTGGCAGAAGTACTCAAGAACAGTGTTCATGAAGACCAACCTTGACAGTTTGATAAATCCTGCAGGTTGGATGGAATGGGATGGTAACTTTGCTTTGGACACTTTGTATTATGCAGAATATGCAAACACTGGTCCTGGCTCCAACACTGCCAACAGGGTCACTTGGAAGGGTTACCATGTTCTCACAAGTGCATCTCAGGCCTCACCTTTCACTGTTGGCAACTTCATTGCTGGCAACTCTTGGATACCTAGCACTTCTGTTCCTTTCACCTCTGGACTTTAA 1572 0.4504 MASSSSSSSSFSLVITTLLLVPFLFSSIVFSYSFKDIQSWCNQTPYPQPCEYYLTNHAFNKPIKSKSDFLKVSLQLALERAQRGELNTHSIGPKCRNVHEKSAWTDCVELYEYTIQRLNRTLDPYTKCTQTDTQTWLSTALTNLETCRAGFYELGVPDYVLPLLSNNVTKLLSNTLSLNKDSNYQFKPPSSKEGFPTWVKPGDRKLLQSSSAASKANVVVAKDGSGKYTTVKAAVDAAPKSSSGRYVIYVKSGVYNEQVEVKSKNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARTPPQRTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWQKYSRTVFMKTNLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSNTANRVTWKGYHVLTSASQASPFTVGNFIAGNSWIPSTSVPFTSGL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01444 523 SUPERFAMILY Pectin lyase-like 211 522 IPR011050 -
Lapu10g01444 523 FunFam Pectinesterase 32 181 - -
Lapu10g01444 523 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Lapu10g01444 523 Pfam Plant invertase/pectin methylesterase inhibitor 36 178 IPR006501 GO:0004857
Lapu10g01444 523 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 180 IPR035513 -
Lapu10g01444 523 NCBIfam pectinesterase inhibitor domain 10 180 IPR006501 GO:0004857
Lapu10g01444 523 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 181 IPR035513 -
Lapu10g01444 523 CDD PMEI-like_3 39 180 - -
Lapu10g01444 523 SMART PMEI_2 32 178 IPR006501 GO:0004857
Lapu10g01444 523 PANTHER PECTINESTERASE 23 515 - -
Lapu10g01444 523 Pfam Pectinesterase 217 509 IPR000070 GO:0030599|GO:0042545
Lapu10g01444 523 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Lapu10g01444 523 Gene3D - 211 523 IPR012334 -
Lapu10g01444 523 FunFam Pectinesterase 211 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01444 Lapu-Chr10 22866657 22870422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01444 10 523 Carbohydrate Esterase AT2G45220 67.054 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01444 K01051 - gmx:100782892 949.888