Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01442 ATGGCGTGTTTTCGCTTGCTTCTACCTCTGTTTATTCCATTCCTACTATTCCCTTTCGTTTCATGTTATTCTTGGAATGACGTCAAACTTTGGTGCAACCAAACTCCAAACCCTCAACCATGTGAGTATTTCTTGACCAATAACCCCACTTATCAATACAAACCCATCAAGCAGAAATCTGATTTCTTCCAGATTTCGTTGAAACTTGCTCAAGAACGTGCTCTCAAAGGCCATGCAAACACCCTCTCACTTGGTTCAAAGTGCAGAAACCCTCGTGAAACAGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACCATTCGTAAACTCAACGAAATCTTAGACCCTAACACCAAGTGCTCCCAAGTTGATGCTCAAACATGGCTCAGCACAGCTCTCACCAATCTTGAGACATGCAAAGCTGGGTTCTACGAGCTTGGGGTTCAAGACTATGTTCTTCCTTTCATGTCCAACAATGTTACCAAGTTGTTGAGCAACACTTTGGCACTAAACAAAGTTCAATACGAAGAACCAAGTTACAAAGATGGGTTTCCAACATGGGTTAAGCCAGGTGATAGGAAGTTGTTGCAAGCTTCTTCTCCAGCTTCTAAGGCCAACGTAGTGGTGGCAAAAGATGGGTCTGGAAAGTACACAACGGTGAGTGCAGCCATAAATGCTGCCCCAAAGAGTAGCAGCGGAAGGTATGTGATATATGTGAAGGGTGGAGTATACAATGAACAAGTTGAGATAAAAGCAAAGAATATAATGTTGGTGGGGGATGGAATTGGAAAGACCATAATCACAGGTAGCAAAAGCGTTGGAGGGGGCACCACAACCTTTCGTTCAGCCACTGTTGCTGTTGTGGGAGATGGATTTATAGCACAAGACATCACGTTTAGAAACACTGCTGGTGCAGCAAATCACCAAGCTGTTGCATTGCGTTCTGGATCAGACTTATCAGTGTTTTACAAATGTAGTTTTGAAGGTTACCAAGACACACTATACGTCCACTCTGATAGACAATTCTACAGGGAATGCAACATCTATGGCACAGTTGATTTCATATTTGGCAACGCTGCTGTTGTGTTCCAAAATTGTAACATATTTGCCAGAAATCCTCCCAATAAAGTGAACACCATCACCGCGCAAGGTCGAACCGATCCAAACCAAAACACTGGAATTTCCATTCACAATTCTAGAGTCACAGCTGCCTCAGATTTGAAACCTGTCCAAAACTCAGTGAGGACTTATCTAGGAAGACCTTGGAAGCAATACTCTAGAACAGTTTTCATGAAGACTTATCTTGATGGTTTGATCAATCCAGCAGGTTGGTTAGAATGGAGTGGCGACTTTGCATTGAACACATTATATTATGGAGAGTACATGAACACTGGTCCAGGTTCTTCTACTGCCAGAAGAGTTAAATGGAAAGGTTATCGTGTGATAACTATGGCTTCTGAGGCCTCAAAGTTCACCGTTGCTAATTTCATTGCAGGAAACACATGGTTACCTTCCACCAAAGTTCCTTTTACCTCTTCTCTTTAA 1548 0.427 MACFRLLLPLFIPFLLFPFVSCYSWNDVKLWCNQTPNPQPCEYFLTNNPTYQYKPIKQKSDFFQISLKLAQERALKGHANTLSLGSKCRNPRETAAWADCVELYEQTIRKLNEILDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPFMSNNVTKLLSNTLALNKVQYEEPSYKDGFPTWVKPGDRKLLQASSPASKANVVVAKDGSGKYTTVSAAINAAPKSSSGRYVIYVKGGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSDRQFYRECNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQNSVRTYLGRPWKQYSRTVFMKTYLDGLINPAGWLEWSGDFALNTLYYGEYMNTGPGSSTARRVKWKGYRVITMASEASKFTVANFIAGNTWLPSTKVPFTSSL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01442 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Lapu10g01442 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Lapu10g01442 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
Lapu10g01442 515 SMART complete 240 418 IPR006633 -
Lapu10g01442 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Lapu10g01442 515 SUPERFAMILY Pectin lyase-like 201 512 IPR011050 -
Lapu10g01442 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Lapu10g01442 515 FunFam Pectinesterase 23 174 - -
Lapu10g01442 515 CDD PMEI-like_3 30 173 - -
Lapu10g01442 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Lapu10g01442 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Lapu10g01442 515 FunFam Pectinesterase 201 515 - -
Lapu10g01442 515 PANTHER PECTINESTERASE 15 507 - -
Lapu10g01442 515 Gene3D - 202 515 IPR012334 -
Lapu10g01442 515 NCBIfam pectinesterase inhibitor domain 8 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01442 Lapu-Chr10 22799903 22801577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01442 1 515 Carbohydrate Esterase AT2G45220 68.533 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01442 K01051 - gmx:100783964 956.051