Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01440 GGAAATGACGTTAAACTTTGGTGTAACCAAACCCCAAATCCTGAACCATGTGAGTATTTCTTGGCCAATAACCCCACTCACCAACACAAACAGATCAACCAAAAATCTGATTTCCTCCAACTTTCACTTCAACTTGTTCAAGAGCGTGCACTTCAAGCCCATGCAAACATCCTCTCACTTGGTTCAAAGTGCAGAAACCCTCGTGAAACAGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACCATCCTTAAACTCAACAAAACCATAGACCCTAACACCAAGTGCTCCCAAGTTGACGCTCAAACATGGCTCAGCACAGCTCTCACCAATCTTGAGACATGCAAAGCTGGGTTCTACGAGCTTGGGGTTCAAGACAATGTTCTTCCTTTCATGTCCAACAATGTTACCAACTTGTTGAGCAACACTTTGGCACTAAACAAAGTTCAATACGAAGAACCAAGTTACGAAGATGGGTTTCCAACATGGGTGAAGCCAGGTGATAGGAAGTTGTTGCAAGCTTCTTCTCCAGCTTCTAAGGCCAACGTAGTGGTGGCAAAAGATGGGTCTGGAAAGTACACAACGGTGAGTGCAGCCATAAATGCTGCACCAATGAGTAGCAGCGGAAGGTATGTGATATATGTGAAGGGTGGAGTATACAATGAACAAGTTGAGATAAAAGCAAAAAATATAATGTTGGTTGGAGATGGTATTGGAAAGACCATAATCACAGGTAGCAAAAGCGTTGGAGGGGGCACCACAACCTTTAGTTCAGCCACTGTTGCTGTTGTTGGAGATGGATTTATAGCACAAGACATCACGTTTAGAAACACTGCTGGTGCAGCAAACCACCAAGCTGTTGCATTGCGTTCTGGATCAGACCTATCGGTATTCTACAGATGCAGCTTTGAAGGTTACCAAGACACACTGTATGTGTATTCTGATAGACAGTTCTATAGAGAATGTGACATATATGGCACCGTGGACTTCATCTTTGGTAATGCTGCTGTGGTGTTCCAAAACTGTAACCTATATGCAAGAAACCCTCCAAACAAAACCAACACAATCACTGCTCAAGGAAGAACCGATCCAAACCAGAACACTGGCATTTCCATTCACAATTCAAGGGTCACTGCTGCCTCAGATTTGAAACCTGTTCAAAGCTCAGTTAAGACCTACCTTGGAAGGCCTTGGAAACAGTATTCAAGAACAGTTTTCATGAAGAGTTATCTAGATAGTTTGATCAATGGAGAGGGTTGGTTGGAATGGAGTGGTAACTTTGCATTAAGCAGTTTGTATTATGGAGAATACATGAACACAGGACCTGGTTCTTCAACAGCAAACAGAGTTAAATGGTTGGGATATCATGTTATTACAAGTGCTTCTGAAGCTTCACAATTCACTGTTGGGAATTTCATTGCTGGAAACTCGTGGTTGCCTGCAACTAGTGTGCCTTTTACCTCTACTCTT 1473 0.4297 GNDVKLWCNQTPNPEPCEYFLANNPTHQHKQINQKSDFLQLSLQLVQERALQAHANILSLGSKCRNPRETAAWADCVELYEQTILKLNKTIDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDNVLPFMSNNVTNLLSNTLALNKVQYEEPSYEDGFPTWVKPGDRKLLQASSPASKANVVVAKDGSGKYTTVSAAINAAPMSSSGRYVIYVKGGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFSSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARNPPNKTNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQSSVKTYLGRPWKQYSRTVFMKSYLDSLINGEGWLEWSGNFALSSLYYGEYMNTGPGSSTANRVKWLGYHVITSASEASQFTVGNFIAGNSWLPATSVPFTSTL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01440 491 FunFam Pectinesterase 177 491 - -
Lapu10g01440 491 Gene3D - 178 491 IPR012334 -
Lapu10g01440 491 SMART PMEI_2 2 147 IPR006501 GO:0004857
Lapu10g01440 491 Pfam Plant invertase/pectin methylesterase inhibitor 4 147 IPR006501 GO:0004857
Lapu10g01440 491 SMART complete 216 394 IPR006633 -
Lapu10g01440 491 SUPERFAMILY Pectin lyase-like 177 490 IPR011050 -
Lapu10g01440 491 FunFam Pectinesterase 1 150 - -
Lapu10g01440 491 PANTHER PECTINESTERASE 4 483 - -
Lapu10g01440 491 NCBIfam pectinesterase inhibitor domain 2 149 IPR006501 GO:0004857
Lapu10g01440 491 Pfam Pectinesterase 183 477 IPR000070 GO:0030599|GO:0042545
Lapu10g01440 491 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 150 IPR035513 -
Lapu10g01440 491 ProSitePatterns Pectinesterase signature 1. 208 227 IPR018040 -
Lapu10g01440 491 CDD PMEI-like_3 6 149 - -
Lapu10g01440 491 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 150 IPR035513 -
Lapu10g01440 491 ProSitePatterns Pectinesterase signature 2. 325 334 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01440 Lapu-Chr10 22785070 22786671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01440 3 491 Carbohydrate Esterase AT2G45220 70.408 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01440 K01051 - gmx:100781697 869.766