Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01439 ATGGCCACCACCACCCTTTGCCTCCAAGAAAAGGGTGTCCTCAAAATGGCCCAAAATCATGTTTCTCAGGCCAAGAATTTGGTTGCAAACTCTTTGAGATTGCATGGCTTTGGAAGCCTAAAAAGCCTAAGCCTTTCTGACCAAACAAGTGCTATGGCCCTTAGAGACTGTGCCAAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGATGTCTCAAAACAGTAGTTACACCAAAGAAGATGCACTCACATGGATAAGTGCTGTGATGACAAATCACAGGACTTGTTTGGATGGTCTGCAAGAAAAAGGGTATGTTGAAGCTCAGGTTCTTGATAGAAACTTGACCATGTCGCTTAAGCAAGCTCTTGTTTTGTATTCAAGGAATAAAGGCATAGCCAAAGGACCCGTTCCTCAGGGAACAATATCCAAAGGTTCTGGTATTTTAGAATCATGGAGTGAAACAAGCTTTAAACCAGATTTCACAGTGGCACAGGATGGTTCAGGAACTCACAGAACAATCCAAGCAGCAGTGAATGCACTTGCTGCAATGGAACACAATCGTCCTGCAAGAGTGATCATATATGTAAAATCAGGTGTCTATACTGAGAAGGTGCAAATTGGACAGAAACTGCATAATGTGATGCTGGTAGGAGATGGCATAGACAAAACTATTGTCACTGGCAGCAGAAATGTTGCTCAAGGTTCTTCCACTATGAACTCAGCCACATTTGATGTATCAGGAGATGGATTTTGGGCGAGAGACGTGACATTTGAGAACACTGCAGGCCCAGAAAAGCACCAAGCAGTGGCAATGAAGGTTAGTTCAGACTTATCAGTGTTCTATAGGTGCAGTTTCAAAGGCTACCAAGATACTCTTTACGTGCACTCAAATCGCCAATTTTACCGTGAGTGTCACATATATGGCACCATAGATTTCATATTCGGGGATGCTACAGTGGTGCTACAGAACTGTGACATCATAGTGAGAAAGCCAATGAGCCACCAATCCAACTTCATCACAGCACAAGGAAGGGATGACCCTAACAAGAACACTGGGATTGCAATCCAAAGTTGCAGGGTGAGAGCAGCATCAGAGTTTCTGACCCTAAAGGATTCTTACAAGACATTCCTTGGAAGGCCTTGGAAGAAGTACTCACGGACTGTGTTCCTGAAGAGTGAGTTGGATGGTCTGATTGAACCAAGAGGATGGGGTGAATGGACTGGAAACTTTGCACTCTCAACATTGTTCTATGGAGAGTACATGAACACAGGAAGTGGTGCCTCTACACAGAATAGGGTGAATTGGCCTGGTTTTCATGTGCTGAGGAGTGCTACTGAGGCCTCACCCTTCACAGTGAACCAGTTTCTGCAAGGAGAAAGGTGGATTCCTGCTACAGGGGTGCCATTCTCTTCTGGAATATGA 1428 0.4475 MATTTLCLQEKGVLKMAQNHVSQAKNLVANSLRLHGFGSLKSLSLSDQTSAMALRDCAKLYEESESRLSHMMSQNSSYTKEDALTWISAVMTNHRTCLDGLQEKGYVEAQVLDRNLTMSLKQALVLYSRNKGIAKGPVPQGTISKGSGILESWSETSFKPDFTVAQDGSGTHRTIQAAVNALAAMEHNRPARVIIYVKSGVYTEKVQIGQKLHNVMLVGDGIDKTIVTGSRNVAQGSSTMNSATFDVSGDGFWARDVTFENTAGPEKHQAVAMKVSSDLSVFYRCSFKGYQDTLYVHSNRQFYRECHIYGTIDFIFGDATVVLQNCDIIVRKPMSHQSNFITAQGRDDPNKNTGIAIQSCRVRAASEFLTLKDSYKTFLGRPWKKYSRTVFLKSELDGLIEPRGWGEWTGNFALSTLFYGEYMNTGSGASTQNRVNWPGFHVLRSATEASPFTVNQFLQGERWIPATGVPFSSGI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01439 475 PANTHER PECTINESTERASE 21 465 - -
Lapu10g01439 475 Gene3D Invertase/pectin methylesterase inhibitor family protein 11 129 IPR035513 -
Lapu10g01439 475 SMART PMEI_2 2 126 IPR006501 GO:0004857
Lapu10g01439 475 FunFam Pectinesterase 155 475 - -
Lapu10g01439 475 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 118 IPR035513 -
Lapu10g01439 475 ProSitePatterns Pectinesterase signature 2. 308 317 IPR033131 -
Lapu10g01439 475 Pfam Pectinesterase 161 461 IPR000070 GO:0030599|GO:0042545
Lapu10g01439 475 NCBIfam pectinesterase inhibitor domain 40 118 IPR006501 GO:0004857
Lapu10g01439 475 Pfam Plant invertase/pectin methylesterase inhibitor 14 111 IPR006501 GO:0004857
Lapu10g01439 475 SUPERFAMILY Pectin lyase-like 158 474 IPR011050 -
Lapu10g01439 475 Gene3D - 155 475 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01439 Lapu-Chr10 22761499 22765030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01439 10 475 Carbohydrate Esterase AT3G60730 55.179 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01439 K01051 - gmx:100792852 825.083