Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01397 ATGAGGTCTCACATGATGAACCTACCTGTTCCTCCGAAAGAGAGCGAGTTCGTCCCGGTTCAACTCAGTTTCGAGGCTGACTCGTCCCCTTCTCAATCCTCTTCTTCCTTCTACGGTCTCAGAGAGAATCCCAAGAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCAGCAGACACGGGCTACGTGATCCTCCAAGATAGAGAGAGCGAGACCGAGTCATCCAGGAACCCAACTCGGAAACGATCCAAGAGAGCGTGGCAACTCGGAGAACCCCTGAAAAAGATGAAACTTTGTGAAAATAATAACAAGAACGAATCTGCCAGTTCTGCTTCCGATACCACAACGGAAGAAGATTTAGCATTTTGTCTAATGATGCTGTCTCGTGACAGATGGAAGGGATGCGATGATCATAAAAGCATACAACAACAGTATAATGATGAGGTTGATGATGATGAGGACGACGACGACGACGATGAAGATGAAGATGAAGATGAGGATGATGAAGAAAAAGATGGTTTTGAATTGGAGGAGATGAAATCTGTTAAGAAGAGTAACAAGGTGCGAGGGAGGTACAAATGCGAAACGTGTGACAAGGTTTTTCGATCTTACCAAGCTCTTGGTGGGCACAGAGCGAGTCACAAGAAGATGAAGTTAAACTGTGAAACAGAGTTCCAGAAAGCTGAAGTTGAATTGGAGCATGTTGTTGTGGCAGAGAAGAAAATCCACGAATGCCCCGTTTGCTCTAGAGTCTTTGGTTCGGGTCAAGCCCTTGGTGGGCACAAGAGAACACATGTGTTAGGTTCTTCTGCAACTACTACCACCGCAACTGTTAGAACTTCTGCAACTGTTTCGGTTAGAGCTTCTGCAAGAGTTGGAGACAGTTTGATAGATCTTAATCTACCTGCTCCAATGGATGATGATGAAGATATTAGCCAGTTCGATCACTCTGCTCTTTCGGATGCAGAGTTTGTCAAACAGTGA 987 0.4519 MRSHMMNLPVPPKESEFVPVQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFSFAADTGYVILQDRESETESSRNPTRKRSKRAWQLGEPLKKMKLCENNNKNESASSASDTTTEEDLAFCLMMLSRDRWKGCDDHKSIQQQYNDEVDDDEDDDDDDEDEDEDEDDEEKDGFELEEMKSVKKSNKVRGRYKCETCDKVFRSYQALGGHRASHKKMKLNCETEFQKAEVELEHVVVAEKKIHECPVCSRVFGSGQALGGHKRTHVLGSSATTTTATVRTSATVSVRASARVGDSLIDLNLPAPMDDDEDISQFDHSALSDAEFVKQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01397 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 220 IPR013087 -
Lapu10g01397 328 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Lapu10g01397 328 MobiDBLite consensus disorder prediction 143 177 - -
Lapu10g01397 328 Pfam C2H2-type zinc finger 244 266 - -
Lapu10g01397 328 Pfam C2H2-type zinc finger 192 217 - -
Lapu10g01397 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 266 IPR013087 -
Lapu10g01397 328 SMART c2h2final6 193 215 IPR013087 -
Lapu10g01397 328 SMART c2h2final6 244 266 IPR013087 -
Lapu10g01397 328 Gene3D Classic Zinc Finger 190 266 - -
Lapu10g01397 328 MobiDBLite consensus disorder prediction 68 88 - -
Lapu10g01397 328 MobiDBLite consensus disorder prediction 70 88 - -
Lapu10g01397 328 MobiDBLite consensus disorder prediction 148 175 - -
Lapu10g01397 328 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 327 IPR044303 GO:0006355
Lapu10g01397 328 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Lapu10g01397 328 SUPERFAMILY beta-beta-alpha zinc fingers 192 266 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01397 Lapu-Chr10 21567681 21569198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01397 1 310 C2H2 Transcription Factor Family AT3G60580 44.828 9.62e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu10g01397 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01397 - - gmx:100776462 392.889