Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01396 ATGGCTTTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATTGGAGATGAAGGTGGTCACATGGATGATGATGATCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGCAATGTGCCACCAAGCAACAAACGCATGTACGCTTTAAGAACAAACCCTAATAGGCTAAAGAGTTGTCGGGTATGTGAGAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCTGACTCCTTTGTCTCCTCTCCGGGTTCCGACGCGGATGACGGTGGCATGGGCGGCGGGGACCGGAGAGGATGTGGGTGGTCTAAAAGGAAGAGGTCTCTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTAGCAAATTGTTTAATGATGTTGTCCAATGCCATTGTAGATCCTCTTGCGGCTGAGCCTGAAGAATCATGTGCATCTGCTAGCAAGGAGGAAGAACAACGAAGAAATCCCATGAATTTCATTGCACCATTGTCATACAAAGTTAATAACAATAGCAACATTCACAACATGAACAACCTCGTTGATAACAAGGCCAAAGGGATTGCTAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTCAAGGGGTGTTTTGCTGCAAGACTAGACAACCTTGATGACAATCTCATCACCGAGGATGATGTAATCACACATGAAGAACTCTTCCCTACAAAATCAAACTCCACCCTCCAATTCGACCATGGCTCCAACCCCACGTTGGGCTCTTCCTCCAAGAGAAAATCCAAAGTGCATGAATGTTCAATTTGCCACAGGAGTTTCTCTTCAGGACAAGCTCTGGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCAGACACCTCCACATTAACGAGATTTCAACAATTTCACGACCACTTGGATCAAATACCCAAGTTTGACACCTCTTCTGAGCCTCTTGATCTCAAGTTAGACCTTAACCTTCCTGCACCTTCCAATGACCTTGCAAGAAGGAATGTTTCTACAGAAATCTACTTGCAGCCTTGGGTTACATCAAAGGATGTTAAAGATGACAACAATAGCCAGTGTCAAAGTCTCCATGTTGATATTGACAACAACGATGAGGACAAAAACACTAATAACTCAATGCAAAATGTGGATAATGAAGCTGATAATAAGATCAAGTTGGCCAAACTTAGTGAGCTAAAGGACATGAACATTGGAGGCAGTTCTTCACCATGGTTGCAGGTGGGGATCAGTTCAGCTGCTACAGACGTCACAATTGATAACTCC 1446 0.4405 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGMGGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLAAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNSNIHNMNNLVDNKAKGIAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLITEDDVITHEELFPTKSNSTLQFDHGSNPTLGSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHDHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNSQCQSLHVDIDNNDEDKNTNNSMQNVDNEADNKIKLAKLSELKDMNIGGSSSPWLQVGISSAATDVTIDNS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01396 482 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Lapu10g01396 482 MobiDBLite consensus disorder prediction 39 54 - -
Lapu10g01396 482 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Lapu10g01396 482 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Lapu10g01396 482 PANTHER OS02G0659100 PROTEIN 2 474 - -
Lapu10g01396 482 MobiDBLite consensus disorder prediction 39 59 - -
Lapu10g01396 482 SUPERFAMILY beta-beta-alpha zinc fingers 231 336 IPR036236 -
Lapu10g01396 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Lapu10g01396 482 Pfam C2H2-type zinc finger 232 256 - -
Lapu10g01396 482 Pfam C2H2-type zinc finger 313 338 - -
Lapu10g01396 482 Pfam C2H2-type zinc finger 13 35 - -
Lapu10g01396 482 ProSitePatterns Zinc finger C2H2 type domain signature. 316 336 IPR013087 -
Lapu10g01396 482 MobiDBLite consensus disorder prediction 421 440 - -
Lapu10g01396 482 MobiDBLite consensus disorder prediction 109 133 - -
Lapu10g01396 482 Gene3D Classic Zinc Finger 11 103 - -
Lapu10g01396 482 SMART c2h2final6 232 254 IPR013087 -
Lapu10g01396 482 SMART c2h2final6 314 336 IPR013087 -
Lapu10g01396 482 SMART c2h2final6 13 35 IPR013087 -
Lapu10g01396 482 Gene3D Classic Zinc Finger 230 336 - -
Lapu10g01396 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 314 336 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01396 Lapu-Chr10 21546286 21547731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01396 136 379 C2H2 Transcription Factor Family AT1G02040 36.327 1.29e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu10g01396 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01396 - - gmx:100793846 837.795