Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01395 ATGCAAGTTCTTAGTTACATTTCTTTTGTAGTATTTATTTATTCTCTGCTCCTAAACCCTAGCCATGGTCTGAATCTCAAATTATTTAATGTTTCCAAAATTAAAAACGATGATCAATGGCAAGTAGCTGCAGCTACATGGTACGGAGAACCAGAGGGTGGTGGATCTGATGGGGGTGCTTGTGGATATGGTGAGAGTGTGGAGAAACCTCCACTCTCTAAAATGATCTCAGCTGGAGGTTCTTCTCTTTTCAAAAGAGGAAGAGGTTGTGGAGCTTGTTATCAGGTGAAATGCACAGAAAACGCAGCTTGTTCGGGAAAACCAGTGAGTGTGATGATAACTGATGAATGCCCTGGCTGTCTAGGATCAGTCCATTTTGATATGAGTGGCACTGCATTTGGTTCCATGGCAACTCCAGGCAATGCAAATAGTCTTCGCAATGTTGGACAACTTCAACTTCTCTACAAAAGGGTTGCATGCTCGTTTGGGAACTCTATAGCCTTTAGCATCGACGATGGGGCCAACCCATATTATTTTGCGACAGAAATAGAATACGAAAATGGAGATGGTGACCTTGTGGAGATTGAGCTGAAGCAAGATAATTCTGAGACATGGCTTCCAATGCAACGTTCATGGGGTTCAAGGTGGGCTTTGAACTTAGGTTCAAGGTTGCAACCACCCTTCTCCTTTAAGCTCACTGAAGAAGGGACTAATAACAGGAAAACCATTGTGGCTGATACTGTAATTCCATCTGATTGGAAACCTGGTCAAGTTTATCGATCTGTTGTTAATTTTTAA 798 0.4223 MQVLSYISFVVFIYSLLLNPSHGLNLKLFNVSKIKNDDQWQVAAATWYGEPEGGGSDGGACGYGESVEKPPLSKMISAGGSSLFKRGRGCGACYQVKCTENAACSGKPVSVMITDECPGCLGSVHFDMSGTAFGSMATPGNANSLRNVGQLQLLYKRVACSFGNSIAFSIDDGANPYYFATEIEYENGDGDLVEIELKQDNSETWLPMQRSWGSRWALNLGSRLQPPFSFKLTEEGTNNRKTIVADTVIPSDWKPGQVYRSVVNF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01395 265 PANTHER EXPANSIN-B3 17 265 - -
Lapu10g01395 265 Gene3D - 27 161 IPR036908 -
Lapu10g01395 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 261 IPR007117 -
Lapu10g01395 265 SUPERFAMILY Barwin-like endoglucanases 37 162 IPR036908 -
Lapu10g01395 265 SUPERFAMILY PHL pollen allergen 165 261 IPR036749 -
Lapu10g01395 265 CDD DPBB_EXPB_N 40 160 - -
Lapu10g01395 265 Pfam Expansin C-terminal domain 166 250 IPR007117 -
Lapu10g01395 265 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Lapu10g01395 265 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Lapu10g01395 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Lapu10g01395 265 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Lapu10g01395 265 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Lapu10g01395 265 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Lapu10g01395 265 Gene3D - 162 265 IPR036749 -
Lapu10g01395 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 165 IPR007112 -
Lapu10g01395 265 Pfam Lytic transglycolase 77 141 IPR009009 -
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Lapu10g01395 265 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01395 Lapu-Chr10 21500576 21502358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01395 19 265 Expansin Gene Family AT1G65680 54.582 9.32e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01395 - - var:108346495 444.121