Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01375 ATGGCGCTTTCTCCTGAAACGTTCACTACCCGAAAACGACGACCCGGGGCGTCGTTTAACACTTCCAAGCTAAGCGACCTTAACCTTCTCTTCTCCCTGCTTCAACTCACGGATCAGATATGTTCTTTAAACCTTAACAACGCCGCCAACTTTCTCTTCAACCGCGCTTCATCTGCCACCATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTCGAAGACCTGATTCGCTCTTCCAACGCCAATCCCAATTCCGCTGTCTTTCCCTACTCTCTCTTCCTCTGTCTCGAAGAAATGTACATCGTTCTGCACAAAATCAAAACTTTGATTGAAGATTTCTCCAACGGAAGCAAGTTCAATTTACTCATGCAAATCGAAGCCGTCGCCGACACCTTCCACAGGCTCACTGGAGAACTCTCCACGCTCCTGGACGTCTTCCCTCTCCGGGAACTCAGCCTAAACGACGATGTTCGGGACCTCGTTCTCCTCATCAGAAAACAGTGCTCCCAATCCAGGTCCTTCATCGAAACAAAACAGATTAACCTTCGGTACGACGTCGTTTCCGTCCTCGACCGCATCAAGAACGAGATCGTGCCTGACCAGGCGCATCTTTCGTCGATTTTCGAGAAACTGGAGATTCGCGACGCTTCGAGCTGCAGGGCAGAGATTGAGAAATTGGAGGAGGAGATTCACAACCGGAGCGAGGAGCAATCCAAGGCGGATCTCGTAGCGTTGATCGGGCTCGTTCGTTTCGCGAAGTGCGTTCTCTTTGGTGCGTCAACGCCTTCGCCGAGGAGCATCACTCTGCGGCGGAGTCAGTCGTCGGAGTTCGCAGTTCCGGCAGATTACCGGTGTCCGATAAGCCTTGAGCTCATGCGCGACCCTGTCGTGGTGGCGACGGGACAGACGTACGATCGTGTGTCGATCAAACTGTGGATGGATTCCGGACACAGCACGTGTCCAAAAACGGGTCAAACTCTATCACACACCGAGCTGATCCCTAATCGCGTGTTGAGGAACATGATAGCGACGTGGTGCCGCGAGCAGAAAATCCCCTTCGAAGCGGAAACGGTAGTAGGGAAACTCAACGGCGGAGTAACCAACAAGGCCGCGTTAGAAGCCACGCGAATGACGGTGTCGTTTCTGGTTAACAAGCTCAAAGAAAACGACAACGTTCCTTTGTCCGTTGAAGACATGAACGGCGCTGTTTACGAGCTTCGGGTTTTGGCGAAAACGGATTCGGATAGCCGAGCCTGTATTGCAGAAGCGGGGGCGATTCCGCTTTTGGTTCGGTTTCTCGATGTGGGAATGGAGAACCCGAGCCTACAGGTTAACGCCGTGACGACGATTTTGAATTTGTCTATTCTGGAAGCGAACAAGACGCGGATAATGGAGACTGACGGAGCGCTAAACGGTGTTGCGGAGGTTTTACTTTCGGGGGCCACGTGGGAGGCGAAGGCCAACGCGGCAGCGACGATTTTTAGTTTATCGGGGGTGCCCGCGCACAGAAAGAGGCTTGGTAGAAAGACGCGTGTTGTCAGCGGGTTGGTGACTTTAGCGCGGGGTGGGCCCGAGGGGGCGCGGCGGGACGCGCTGGCGGCGATACTCAACCTCGCAGCGGACAGAGAGACGGTCGCGCGCCTGGTGGAGGGGGGCGCGGTGGTCATGGCGGCGGAGGTCATGGCAGCGATGCCGGAGGAGGGGGTGACTATTCTGGAGGCGGTGGTCAAAAGGGGTGGGTTGGTAGCGGTGGCGGCGGCGTACGCCGGGATTAACCGGCTAGGGGCGGTTCTCAGAGAGGGGTCCGAGAGGGCAAGAGAGAGCGCAGCGGCGACGCTGGTCACCATGTGTCGGAAGGGGGGTTCGGAGGTTGTGGCGGAGCTGGCGGCGGTTCCCGGAGTGGAGAGGGTTATTTGGGAGCTCATGGCCGTGGGGAATGTCAGGGGGCGGCGGAAGGCGGCTACACTGTTGAGGATTTTGAGGCGGTGGGCGGCGGGGCTGGATGGCGGAGAGAGTGAAGGTCTCTCGACAACCACCATGATCACTTCCCCAACCTCTGGGGTTGTTCCAGCTGCCACGACTTCCTTAGCACAGTAA 2094 0.5649 MALSPETFTTRKRRPGASFNTSKLSDLNLLFSLLQLTDQICSLNLNNAANFLFNRASSATIRKTQLLGVVFEDLIRSSNANPNSAVFPYSLFLCLEEMYIVLHKIKTLIEDFSNGSKFNLLMQIEAVADTFHRLTGELSTLLDVFPLRELSLNDDVRDLVLLIRKQCSQSRSFIETKQINLRYDVVSVLDRIKNEIVPDQAHLSSIFEKLEIRDASSCRAEIEKLEEEIHNRSEEQSKADLVALIGLVRFAKCVLFGASTPSPRSITLRRSQSSEFAVPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMDSGHSTCPKTGQTLSHTELIPNRVLRNMIATWCREQKIPFEAETVVGKLNGGVTNKAALEATRMTVSFLVNKLKENDNVPLSVEDMNGAVYELRVLAKTDSDSRACIAEAGAIPLLVRFLDVGMENPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLLSGATWEAKANAAATIFSLSGVPAHRKRLGRKTRVVSGLVTLARGGPEGARRDALAAILNLAADRETVARLVEGGAVVMAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGINRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERVIWELMAVGNVRGRRKAATLLRILRRWAAGLDGGESEGLSTTTMITSPTSGVVPAATTSLAQ* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01375 697 Pfam Armadillo/beta-catenin-like repeat 413 453 IPR000225 GO:0005515
Lapu10g01375 697 MobiDBLite consensus disorder prediction 669 697 - -
Lapu10g01375 697 FunFam RING-type E3 ubiquitin transferase 364 554 - -
Lapu10g01375 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 356 IPR013083 -
Lapu10g01375 697 Coils Coil 215 235 - -
Lapu10g01375 697 CDD RING-Ubox_PUB 279 331 IPR045210 -
Lapu10g01375 697 Gene3D - 361 585 IPR011989 -
Lapu10g01375 697 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Lapu10g01375 697 SMART arm_5 412 454 IPR000225 GO:0005515
Lapu10g01375 697 MobiDBLite consensus disorder prediction 671 697 - -
Lapu10g01375 697 PANTHER U BOX DOMAIN-CONTAINING 85 660 - -
Lapu10g01375 697 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Lapu10g01375 697 SUPERFAMILY ARM repeat 378 659 IPR016024 -
Lapu10g01375 697 FunFam RING-type E3 ubiquitin transferase 272 351 - -
Lapu10g01375 697 SUPERFAMILY RING/U-box 272 351 - -
Lapu10g01375 697 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Lapu10g01375 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 467 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01375 Lapu-Chr10 20956214 20958805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01375 11 689 U-box Gene Family AT5G01830 55.102 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01375 - - gmx:100805405 1046.96