Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01365 ATGGATTCTAGGAGGCGTAAAAAAGCATCTACGCAACGCAAGTTGCAACAACTTCGATCGGTCACAAGTTCCAGTGCTGTTAACAAAGCCTCAATTATTGTGGATGCCACAAGATACATAGAGGAGCTGAAGCAAAAAGTGGATGGATTGAACTCTGAGCTTGGAACAGCTGAATCATCTATCTCCCAAGACGAACTACCCATGGTCACCGTAGAAACCCTAGAAAGGGGTTTCCTCATTAATGTGTTTTCAGAAAGGAATTGCCCTGGCATGCTTGTGGCTATACTCGATGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAGGACACTTTCCAGCTTGAAGCTGTTGGAGGAGAAAGTCAAGAGAACGAAAGCATCGATGCACAAGTGGTGAAGCAAGCAGTGATGCAAGCAATTCAAAACATGGATTAA 450 0.4444 MDSRRRKKASTQRKLQQLRSVTSSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVMQAIQNMD* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01365 149 Gene3D - 1 66 IPR036638 GO:0046983
Lapu10g01365 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 61 IPR036638 GO:0046983
Lapu10g01365 149 CDD ACT_UUR-ACR-like 89 145 - -
Lapu10g01365 149 Coils Coil 33 60 - -
Lapu10g01365 149 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01365 Lapu-Chr10 20343619 20345534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01365 14 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.082 2.51e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01365 - - gmx:100499821 271.166