Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01363 ATGCCATGCAAACACATATACCATTCGGAATGCATCTTACTGTGGCTCGCGATTCGAAACTCATGCCCCGTGTGCCGCAATGAGTTGCCTGTTGAGAACGCGTGTGAGGGGTCGGAGCGTGTGGAGGAGGAAGAGAATAATGTGGGGTTGACGATTTGGCGGTTATCGGGTGGAGGGTTTGCGGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAATGTTCCTCTCGTATACACGGAAGTGGATGGTGGGTTAAACTTTAACAACGTTGTCATGGGTGAACCCAGAAGGATTTCTTGGTCTGTTTCGGAGACTCCAGGGAGGAGAAGAGGTGGCGCGTTTAGAAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGGGTTGGGCCTCAATGTTCTTCTAGTTCTAGTTCTTCAAGAACCCCGATGAGTACCAGTGTTAGGGCTTCACGTCCTAACATGGGTCCTTCTGCATCGTCGCGTAGGACTTGGTCAATGATGTCAACGGTGGAACCAGACCATGGTAAGGGTAATATAACATCAATTGGTACAGATAATGTTTTTAGCACCTTCATCTTTGTTGTTGATCAAGCAATAATATTCACGAGCCCGTCGGAGGCGCCGCAGAAGCCTCTGCGTCCACCGCCAGCGTCGTCACTACGCACTCCTGCTTCAGTAGCGTCTTCACTGCCGCGTGTTTCAGCCTCTCGCCTCCCACCGCCACACCTTCAGCCACGTGCAAACTAA 759 0.5099 MPCKHIYHSECILLWLAIRNSCPVCRNELPVENACEGSERVEEEENNVGLTIWRLSGGGFAVGRLGRREGEREVNVPLVYTEVDGGLNFNNVVMGEPRRISWSVSETPGRRRGGAFRRMFNGLFSCLRGGGVGPQCSSSSSSSRTPMSTSVRASRPNMGPSASSRRTWSMMSTVEPDHGKGNITSIGTDNVFSTFIFVVDQAIIFTSPSEAPQKPLRPPPASSLRTPASVASSLPRVSASRLPPPHLQPRAN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01363 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 50 IPR013083 -
Lapu10g01363 252 MobiDBLite consensus disorder prediction 209 252 - -
Lapu10g01363 252 MobiDBLite consensus disorder prediction 131 181 - -
Lapu10g01363 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 30 - -
Lapu10g01363 252 SUPERFAMILY RING/U-box 1 31 - -
Lapu10g01363 252 Pfam Ring finger domain 2 26 IPR001841 -
Lapu10g01363 252 ProSiteProfiles Zinc finger RING-type profile. 1 26 IPR001841 -
Lapu10g01363 252 MobiDBLite consensus disorder prediction 132 171 - -
Lapu10g01363 252 Pfam Protein of unknown function (DUF1117) 48 155 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01363 Lapu-Chr10 20265990 20266966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01363 1 33 C3H Transcription Factor Family AT5G15820 66.667 9.65e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01363 K11982 - gmx:100789228 248.054