Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01351 ATGAGCCAACGTGTCCCTAGCTGCGATGTGGAGGACAACATCATTACCACACCCACAAAATTCCCTCTTCTTTCCACCTCCAATTTCATAACCCATGAAGTCCCAATGTTGGGCTACAAAGTTTCATGCAAAAAGGGACAATCTTTGACGCATGAAGACACCCCTGGGAACCAAACATGGGACATACCTCGTACAAGTGGAACCTTGGAGTCCGTAGTGAACCATCGTATCGGCAAAAACTGCCACAAGTTAGTTACTAAGGACGCCTTAGTGCCCTGTTTTTCCGAACAGGGCACAGTGTTTGGCGCGTGCAAGAAGGGGTACATCGAGCGCGTTGCGTCTAGAGCTGGGGTGGTGGCGCGTGGTCCCTCAACGCTTGAGTTGAGTGGCGGCAAGGACTCGAGTGTGAGTGGTAGTAACACTCGTGGAAGGGAGTTGAGCGTGACTTTCAATTCAGTCACCATGGGTTCGCCGGAAAACACCTCTAGCTCTGGTAAGCAGTGTACGGGAACAACCGCCAGTGACGACCGTGATTCCATAAGCCACCGTAGGTCGCTGAGTGAGGCACAGGAGGAGGATTGCAAGACAACAGGAGTTGATAGATCTTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTGCACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACCGATAAAGCTTCGATGCTGGATGAGGTTATTCAATATATGAAGCAATTGCAAGCACATTTGCAAATGATGAATTGGATGAAGATGTACTCGTCGATGATGCTGCCAATTACCATGCAACAGCAACAACTTAAAATGTCGATGATGATGGCTCAGATGGGCATTGGAATGAGAATGAGCAAGGATATGGGGATGAATATGAATATGAACATGAACATGAACAACATGAACATTCCCGCCATTGCTCCCATGCTCCACCACCTTCCTCCCTTCATGGCTATGGCTTCATGTAGTGATCGATTACTAGGTGAACCAGAGAAGTCAGTGACAATGGATGCATACAATAAGATGACTGCTCTGTATAATCAGATGTATCCTCCTCCTCCAGGTTCTAGCCCCAAGAAATGA 1134 0.4709 MSQRVPSCDVEDNIITTPTKFPLLSTSNFITHEVPMLGYKVSCKKGQSLTHEDTPGNQTWDIPRTSGTLESVVNHRIGKNCHKLVTKDALVPCFSEQGTVFGACKKGYIERVASRAGVVARGPSTLELSGGKDSSVSGSNTRGRELSVTFNSVTMGSPENTSSSGKQCTGTTASDDRDSISHRRSLSEAQEEDCKTTGVDRSCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSMMLPITMQQQQLKMSMMMAQMGIGMRMSKDMGMNMNMNMNMNNMNIPAIAPMLHHLPPFMAMASCSDRLLGEPEKSVTMDAYNKMTALYNQMYPPPPGSSPKK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01351 377 Gene3D - 205 271 IPR036638 GO:0046983
Lapu10g01351 377 CDD bHLH_AtPIF_like 210 272 IPR047265 -
Lapu10g01351 377 SMART finulus 216 265 IPR011598 GO:0046983
Lapu10g01351 377 MobiDBLite consensus disorder prediction 123 199 - -
Lapu10g01351 377 MobiDBLite consensus disorder prediction 128 175 - -
Lapu10g01351 377 Coils Coil 216 236 - -
Lapu10g01351 377 Pfam Helix-loop-helix DNA-binding domain 214 260 IPR011598 GO:0046983
Lapu10g01351 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 277 IPR036638 GO:0046983
Lapu10g01351 377 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 96 374 IPR031066 -
Lapu10g01351 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Lapu10g01351 377 MobiDBLite consensus disorder prediction 176 199 - -
Lapu10g01351 377 FunFam transcription factor UNE10 isoform X1 205 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01351 Lapu-Chr10 19913947 19918376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01351 1 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 37.785 2.31e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g01351 HLH 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01351 - - gmx:100820284 421.779