Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01341 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCACCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCTGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAACATATTGTGATATGTTCCATTCAAACGATTCTGGTTGGAGGGAATGCACGTCATGTGACAAGCGTCTCCATTGTGGATGCATCGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCGAGGAATTCTGGACTTCAACCTATTGCAAGCAATGAAAAGCCTAATGGATCGGGGACATCAAAGGTAGTAGATGTCAGTGCGCAGCAGTGTACTGCTCTGGCCAACCAATTAAATGTGAGGGGTATGCAAGGAGGGCATTATGCAGAGAATGATGGTCTCCGATGCTGGTTCAAACCTCATAAAGTTGAAACAGATGGACCTTCTACTGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTATGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAGCTGTAAGGTAGACACAGAGATGCGAGATATATATGAATCTTTGGCACAGACAAATTTAAGTATGACCCTTGCTACTCCTTTAGGAAATTCAATCCCCTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTCCACTTTTATTGGGGTCAAGGTCTCGCCATCTTTTACCTAAGCCCCCTAGGTCAACTAGCGCTACAGGCTTAGAAGTAAATGCTGGCATGGTATCCCAGATTCGTGTAGCAAGACCACCTGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCACGTTATTGGCCCAGGATTACCGATCAAGAGTTGCAACAGATATCAGGAGAGTATCCAGCATTTTCAAATTCCACTATCGTGCCACTCTTTGAAAAGATGCTGAGTGCAAGTGATGCTGGTCGAATTGGTCGCCTTGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATTTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAGTTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAACTCTACACCAGTACAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGCTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCTGCTGGTGGTGGTGACATGAATTGGAATAACATTGACATGCCCGAGAGCAGGAAAAGAGAGGGGTTGCCTTTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAGCTTACTTGGGAAGAGGCTCAGGATTTGCTCCGACCACCTCCTACTGTTAAGCCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGAGTATGAAGAACCTCCAGTCTTCGGAAAGAGGAGTATATTTGTAGTTCGATCAGCTGGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTACTAATTCCCCCTAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTCTGAGGCTGAACAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACCATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGAACACCGGTAGTTACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCCTGCATTGTCTGTATCCAACCACCAAGTGGAAAGGGCAAACACAAACCTACTTGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGCCAATCCGAACGTGAAGCTGAGATTGCACAGAGAAATCAGTTAGCATGGCGGACCAAGGATGAATCAGAAGTAGACAGTACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAATGAAGTAAGGGCGGCAAATGAGTTGGACCCAAGGAGTCAAGACCATGTTGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATCGAGAAGAAGCACAAGCTGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGGAAAATGGCCTCACTAGTTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGCACAGGCACAGACAACCAATGAGAGTGAGGGAAGACACAATGAGGATTGCGGTACTGCTTCAGTTATTCATGAGCAGGATAGCAGTCCTGAAGATAACAGTGGGCAAGATAAAGACCAAAACAATTCACTCTCATGA 2736 0.4485 MESRSCMNVACTTLTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIASNEKPNGSGTSKVVDVSAQQCTALANQLNVRGMQGGHYAENDGLRCWFKPHKVETDGPSTEMKPEILPSVGELGSTLISQFHYESNGSSKASKAESCKVDTEMRDIYESLAQTNLSMTLATPLGNSIPFHSSVVDEREQSKTSPLLLGSRSRHLLPKPPRSTSATGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGEYPAFSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTPVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNVLSKKWNSAGGGDMNWNNIDMPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDQVFEEYEEPPVFGKRSIFVVRSAGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLAWRTKDESEVDSTSRHLTPVDGLENEVRAANELDPRSQDHVAEAAKGQLDLNCQPDREEAQAGPNNVSMTSLLEEANLPLETYLKENGLTSLISEQQTNSASNAQAQTTNESEGRHNEDCGTASVIHEQDSSPEDNSGQDKDQNNSLS* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01341 911 Pfam B3 DNA binding domain 325 424 IPR003340 GO:0003677
Lapu10g01341 911 SUPERFAMILY DNA-binding pseudobarrel domain 322 425 IPR015300 -
Lapu10g01341 911 MobiDBLite consensus disorder prediction 887 911 - -
Lapu10g01341 911 MobiDBLite consensus disorder prediction 858 911 - -
Lapu10g01341 911 ProSiteProfiles Zinc finger CW-type profile. 591 641 IPR011124 GO:0008270
Lapu10g01341 911 MobiDBLite consensus disorder prediction 858 874 - -
Lapu10g01341 911 Gene3D - 594 650 - -
Lapu10g01341 911 SMART B3_2 325 425 IPR003340 GO:0003677
Lapu10g01341 911 CDD B3_DNA 323 424 IPR003340 GO:0003677
Lapu10g01341 911 Gene3D - 299 429 IPR015300 -
Lapu10g01341 911 ProSiteProfiles B3 DNA-binding domain profile. 325 426 IPR003340 GO:0003677
Lapu10g01341 911 FunFam B3 domain-containing transcription repressor VAL1 299 430 - -
Lapu10g01341 911 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 863 - -
Lapu10g01341 911 Pfam CW-type Zinc Finger 596 638 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01341 Lapu-Chr10 19559168 19567555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01341 1 880 B3 DNA Binding Superfamily AT4G32010 49.609 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu10g01341 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01341 K09287 - gmx:100778833 1698.33