Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01328 ATGCAACCAAGAACAAGTGTTGTTGGAGATGGCTTTCGGGTAAGTGCCACAAGTATACCTAGTAATACTAGTGGTGGGTGTGAACCAGATGACCTAGACTCATTTCGTGATGTGTACATATGGGGTGAGGTTTTGTCAAATGGGGTTTCACCTGATGGGATTGGAACTCAAATTCCTTCTCAGATAGATGTGTTGATTCCTAAGCCTTTAGAGTCAAATGTTATTCTAGATGTATGCCACATTGCAACTGGTGCACAACACATTGCTGTGGTAACTAAGCAAGGACATGTTTTTACTTGGGGAAAAGAATCAGGGGGGAGACTTGGTCATGGAATTGATAAAGATTTTGTTTCCCCCCGTGAAGTTAAGTTTCTTGAAGGTACTGATTTTGACTTCGTTGCATGTGGAGAGTATCATACAGGAGTTATATCTAAGTGTTATGAACTTTATACATGGGGTGATGGAACACACAATGTTGGACTTCTAGGACATGGTTCTGAGGCTAGCCATTGGATTCCAAAAATGGTGAATGGCCCTTGGGAAGGAGTTCAAGTTGTGTCTGTTGCATGTGGCACATGGCATTCGGCATTGGCAACCTCAGATGGAAAACTTTTTACCTTTGGTGAGGGGGCATTCGGTGTCTTGGGCCATGGAGATCAAGAGAGTTTGTGGTATCCTAAAGAAGTACAACTTTTAAGTGGACTAAAGGCTATAAAGGTGGCATGTGGAGTTTGGCACACAGCAGCTATTATAGATGTTGAATCTGAACCTGGTTCAAATGCTTCATCTGGGAAGCTTTACACATGGGGTGATGGAGATAAACATTGTTTGGGTCATGGAAACAAAGAAACATACCTTCAACCTACTCGTGTTGCTCCACTTACGGAATATAATTTCCACCAAGTAGCATGTGGGCACACAATGACTGTTGCTCTCACTACATCTGGTCATGTATTTACCATGGGAGGCACAGAACATGGTCAATTAGGAAACCCTATGTCGGTCGGAAAAATACCTACTCTAGTCCAAGATAAGTTGCTTTGTGAGTTTGTTGGGGAAATATCGTGTGGAACACATCATGTTGTTGCCTTGACAAAAAAAGGTGAACTATATACATGGGGAATGGGTGCCAATGGAAGATTAGGGCATGGAGATGTAGAAGATAGGAAATCTCCTACATTGGTGATAGCCTTGAAAGAAAGGACCATAGAAAACATCTCATGTGGTTCTAACTTTACATCGTGTGTATGCATCCATAAATGGGTCTCCGGAGCTGATCAAACTGTTTGCTCTGGTTGTCGACAAGCATTTGGTATAACAAGAAAAAAGCATAACTGTCACCACTGTGGTTTGGTATTTTGTCATGCTTGTAGTACTAAAAGGGCATTCAAAGCAGCATTGACTGCAACACCAGAAAAACTTCATCGTGTGTGTGATAATTGTTATGTTAAGCTTAAAGTTGTTGATGATAATGGTTCTTCCAAGTTAGAAAAAAAAGTTACTCCTTCTCATAACTTGATAAATGAGAAGGAAAGATCAAACCAAGGAGCAATAAGATCTACAAGAACTCTCTTGGCTCCTACAACTGAACCAGTGAAATACCTTGAAATAAAGAATAATAATCCTGAAGGTAATGATGATTCTACTTCCTTTGTACGAGCTTCTCTTGTTCCATCTCTTGTACAATTGAAAGATGTTGCATTTCCAAGTTCACTTAGTTCTTTTCAAAGTATTTTAAAGCCTATTATACCTCCTAGTCCACCACAAACTCCGCCTCAAACTCCGCCACAACAAACCAATTCGGGGCCTGTATTCACAAACACAATTCAAAGTTTAAAGCAAAAAAGTGACATGCAAGATGTTGAAATCAAGAGGCTTAACAAAAAGGCTTTGGAAGCTTCTGCCCTTGCCGCAGTGGAATCTTCCAATCACAGAGTAACAAAAGAATTTGTTGAATCTACTATATATCAGATGAAGAAAATGACTGACAAATTGCCTGGAGAAATTTCGGAAAGTCGGAATTTGAGAAATGTACTTACTCGAGTTAAAGATTTTCTTAAAGAAAGTTCAGAATCTGAAACATCTTCATCATCAAAGTTGGAGATTAAGCCAAAAAATGCACTTGATATACCAACCTCAAATAGTGACTCTTCCAAATTACAAGCTGGAGAAGATGTAGATGCTACAGAAGCCAAACTTTCTCAAGTTGAAGGAGAATTCTTTGAAGAAAGTGAAAAATCAAACTTGGAGCCTAAGGAACAAAATGTGGATCATGATAAAGAAAATTTCTTTGAAGAAACAAATAAATCAAAGTTGGAGTCCAGAACACAAAATATACCTACTTCAGATACCAGCACTTCCAAAACGCAGGAACACAAACTTGATGAAAGTGTTCATGACATAGAAGTTAACCATTGTGAAGATAGCGGAAATTCTCTCAAAGAAAGTGATGAACCAAATTCAGAAATTGAATACCAAAATGGAACTCGTACATTTTCCTCAACTAGTGACATTTCTGCATTTTCTGATGATCATAGAGTAGAGGAAAATGTTGAGGTTGCAGGAGTTGATCAATCTCAGGCAGAAGAACATGTCCTTGAAAAATGTACTGGGTCATATGCTTCTAGTATTGGCACAGAAATGTCTTCAGAAAACTCCAAAAAGGGTTCAAGATCTTCACGAAATGGAGAAGTACAAGTTATTGAAAAATTTGATCGTGGAGTTTATGTGATTCTCATGTTACAGTCTGATGGCACCAAAATTTTTAAACGAGTTAAATTCAGGAGATCTCCTTCCCTGACGAATCACAGCCTTGCAGCCTTGAGCCCATGGCACACAGGTGTAAAGGCTTGA 2853 0.3922 MQPRTSVVGDGFRVSATSIPSNTSGGCEPDDLDSFRDVYIWGEVLSNGVSPDGIGTQIPSQIDVLIPKPLESNVILDVCHIATGAQHIAVVTKQGHVFTWGKESGGRLGHGIDKDFVSPREVKFLEGTDFDFVACGEYHTGVISKCYELYTWGDGTHNVGLLGHGSEASHWIPKMVNGPWEGVQVVSVACGTWHSALATSDGKLFTFGEGAFGVLGHGDQESLWYPKEVQLLSGLKAIKVACGVWHTAAIIDVESEPGSNASSGKLYTWGDGDKHCLGHGNKETYLQPTRVAPLTEYNFHQVACGHTMTVALTTSGHVFTMGGTEHGQLGNPMSVGKIPTLVQDKLLCEFVGEISCGTHHVVALTKKGELYTWGMGANGRLGHGDVEDRKSPTLVIALKERTIENISCGSNFTSCVCIHKWVSGADQTVCSGCRQAFGITRKKHNCHHCGLVFCHACSTKRAFKAALTATPEKLHRVCDNCYVKLKVVDDNGSSKLEKKVTPSHNLINEKERSNQGAIRSTRTLLAPTTEPVKYLEIKNNNPEGNDDSTSFVRASLVPSLVQLKDVAFPSSLSSFQSILKPIIPPSPPQTPPQTPPQQTNSGPVFTNTIQSLKQKSDMQDVEIKRLNKKALEASALAAVESSNHRVTKEFVESTIYQMKKMTDKLPGEISESRNLRNVLTRVKDFLKESSESETSSSSKLEIKPKNALDIPTSNSDSSKLQAGEDVDATEAKLSQVEGEFFEESEKSNLEPKEQNVDHDKENFFEETNKSKLESRTQNIPTSDTSTSKTQEHKLDESVHDIEVNHCEDSGNSLKESDEPNSEIEYQNGTRTFSSTSDISAFSDDHRVEENVEVAGVDQSQAEEHVLEKCTGSYASSIGTEMSSENSKKGSRSSRNGEVQVIEKFDRGVYVILMLQSDGTKIFKRVKFRRSPSLTNHSLAALSPWHTGVKA* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01328 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 497 IPR013083 -
Lapu10g01328 950 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 315 IPR000408 -
Lapu10g01328 950 MobiDBLite consensus disorder prediction 876 896 - -
Lapu10g01328 950 SMART fyve_4 416 487 IPR000306 GO:0046872
Lapu10g01328 950 MobiDBLite consensus disorder prediction 773 787 - -
Lapu10g01328 950 SUPERFAMILY FYVE/PHD zinc finger 420 489 IPR011011 -
Lapu10g01328 950 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lapu10g01328 950 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 240 250 IPR000408 -
Lapu10g01328 950 Gene3D - 261 421 IPR009091 -
Lapu10g01328 950 Pfam Regulator of chromosome condensation (RCC1) repeat 95 143 IPR000408 -
Lapu10g01328 950 Pfam Regulator of chromosome condensation (RCC1) repeat 263 312 IPR000408 -
Lapu10g01328 950 Pfam Regulator of chromosome condensation (RCC1) repeat 149 197 IPR000408 -
Lapu10g01328 950 Pfam Regulator of chromosome condensation (RCC1) repeat 315 364 IPR000408 -
Lapu10g01328 950 Pfam Regulator of chromosome condensation (RCC1) repeat 201 250 IPR000408 -
Lapu10g01328 950 Pfam Regulator of chromosome condensation (RCC1) repeat 367 415 IPR000408 -
Lapu10g01328 950 Coils Coil 609 629 - -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 188 204 IPR000408 -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 204 218 IPR000408 -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 305 323 IPR000408 -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 363 384 IPR000408 -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 97 113 IPR000408 -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 78 91 IPR000408 -
Lapu10g01328 950 PRINTS Chromosome condensation regulator RCC1 signature 147 163 IPR000408 -
Lapu10g01328 950 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 147 201 IPR000408 -
Lapu10g01328 950 CDD FYVE_like_SF 430 482 - -
Lapu10g01328 950 MobiDBLite consensus disorder prediction 691 722 - -
Lapu10g01328 950 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 95 146 IPR000408 -
Lapu10g01328 950 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 419 IPR000408 -
Lapu10g01328 950 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 424 486 IPR017455 -
Lapu10g01328 950 FunFam PH, RCC1 and FYVE domains-containing protein 1 7 255 - -
Lapu10g01328 950 ProSiteProfiles BRX domain profile. 898 950 IPR013591 -
Lapu10g01328 950 Pfam FYVE zinc finger 420 485 IPR000306 GO:0046872
Lapu10g01328 950 SUPERFAMILY RCC1/BLIP-II 36 421 IPR009091 -
Lapu10g01328 950 MobiDBLite consensus disorder prediction 581 598 - -
Lapu10g01328 950 MobiDBLite consensus disorder prediction 723 772 - -
Lapu10g01328 950 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 652 - -
Lapu10g01328 950 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 253 IPR000408 -
Lapu10g01328 950 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 81 91 IPR000408 -
Lapu10g01328 950 MobiDBLite consensus disorder prediction 580 605 - -
Lapu10g01328 950 Pfam Transcription factor regulating root and shoot growth via Pin3 899 930 IPR013591 -
Lapu10g01328 950 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 367 IPR000408 -
Lapu10g01328 950 Gene3D - 31 260 IPR009091 -
Lapu10g01328 950 MobiDBLite consensus disorder prediction 686 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01328 Lapu-Chr10 18958958 18966048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01328 385 494 Acyl Lipid Metabolism Gene Families AT4G33240 28.099 9.24e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01328 - - gmx:100798841 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01745 1 30417920 30428535 Lapu10g01328 10 18958958 18966048 PCT