Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01299 ATGTCTTTCAGTTTCACTGACCTCCTTTCCAACAGCAATAGTTTGACCATGGATGATGATCCTTTTGGACTTGAATTTCCTAACAATTTCAAACAACTTCAACCTCTTTCATTACCTCTCCCTTCTTATGCTGAGTTCCCACCTGGTTTTGCCCCAACAACACAGTCATTGCACTCACCCCTCTTGTTTTCTTCTCAAAATGTTCCTGCATCTTACACAACTGAGTCGTCTTCCATCATGAGCTTCAACATGCGAAACAGTTCAACTGAGGACCAGCCAGGAAACAAGGAGGAAGAGAGAAACTACTCTGACCTCTCTTTCCTGACAAAAACAAACTACGTGCCTCTCTTTCAATCTTCCACAAGCATGTTTCAAGTGGAGCCACTAAAGAAACAGGGCACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATTTGCATCCACTCAGGGCTTCGCCACAGAAGTTGCCACAATCAAACCTGAAATACAAAGCAATTCTACATCTGGGTCTGTTCAATTTAACTCCAATAATGCTTTTAAGTCTATTAGAGAACAAAGGAGATCAGAAGATGGATACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAGAATCCGCGCAGTTATTACAAGTGCACGTACCCAAATTGTTCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTATACAGGGGAAGTCACAATCACCCTAAGCCACATAATAGAAAAAATGGCTCCCAATCAATTCATCAAACTTCTTCATCCTGCACTATCTCAGGGATTTCAGATCAGTCTATGGGAGAGGAAGATTTTGAGCAAACGTCACAAACTAGTTGCTCTGGAGGGGTTGATGATGATGACCTTGGACCTGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTCTAATTCCTCAGCTGGGAGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTGACCCCAGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTGCAAATGATATGAAAGCTGTTATTACAACCTATGAAGGGAAACATAACCATGATGTGCCATTAGGACGAGGAAATGCAAGCTATAACAAAACTTCTCTAAACAACAACACCGGCAATATTACAGCCCCTGCCCCTATAAGGCCTTCAGCAGTGAATGGTTATTCTAACTCAGCAAGTTTCACCAATTCACTCCCTGAAACAAAGCTACCAGCATCTGCAAGTCAAGAACCTATTTCAATGGACATGTTGCTGAGCCCTGGAAACCTAGGATTTTCGGCTAATGACTCATTCCTTCAGTCTTTTTTTTCAAAGAACTTCTAA 1491 0.4131 MSFSFTDLLSNSNSLTMDDDPFGLEFPNNFKQLQPLSLPLPSYAEFPPGFAPTTQSLHSPLLFSSQNVPASYTTESSSIMSFNMRNSSTEDQPGNKEEERNYSDLSFLTKTNYVPLFQSSTSMFQVEPLKKQGTMIFNEAAKQTDFSSERTETKSEFASTQGFATEVATIKPEIQSNSTSGSVQFNSNNAFKSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTYPNCSTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNGSQSIHQTSSSCTISGISDQSMGEEDFEQTSQTSCSGGVDDDDLGPEAKRWKGENENDDYSNSSAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVTPGCPVRKHVERAANDMKAVITTYEGKHNHDVPLGRGNASYNKTSLNNNTGNITAPAPIRPSAVNGYSNSASFTNSLPETKLPASASQEPISMDMLLSPGNLGFSANDSFLQSFFSKNF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01299 496 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 144 429 IPR044810 GO:0003700
Lapu10g01299 496 ProSiteProfiles WRKY domain profile. 345 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 SMART WRKY_cls 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 SMART WRKY_cls 350 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 Gene3D WRKY domain 185 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 Gene3D WRKY domain 337 403 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 MobiDBLite consensus disorder prediction 306 321 - -
Lapu10g01299 496 MobiDBLite consensus disorder prediction 322 337 - -
Lapu10g01299 496 MobiDBLite consensus disorder prediction 264 302 - -
Lapu10g01299 496 FunFam WRKY transcription factor 33 337 403 - -
Lapu10g01299 496 FunFam WRKY transcription factor 187 260 - -
Lapu10g01299 496 SUPERFAMILY WRKY DNA-binding domain 195 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 MobiDBLite consensus disorder prediction 81 101 - -
Lapu10g01299 496 Pfam WRKY DNA -binding domain 201 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 Pfam WRKY DNA -binding domain 351 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 ProSiteProfiles WRKY domain profile. 195 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g01299 496 MobiDBLite consensus disorder prediction 250 337 - -
Lapu10g01299 496 SUPERFAMILY WRKY DNA-binding domain 342 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01299 Lapu-Chr10 17727438 17730782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01299 195 473 WRKY Transcription Factor Family AT2G38470 55.769 3.71e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu10g01299 WRKY 6.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01299 K13424 - gmx:102666898 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02326 6 22798859 22802330 Lapu10g01299 10 17727438 17730782 PCT