Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01292 ATGGGAGGGTGTTGCAGTTGTCAAGTTTCTGTACATGATGTGGAATGTTCATCTAACCATAACCATGATGATGGTGCATGTGAACATGGTGGGGTCATGTTAAGAGGGTCCTCTGAGTTTGTATCAATGTACAGCCAAAAGGGTTCAAAAGGAGTTAATCAAGATGCATTGACTGTTTGGAAGGACTTCACTGGAAGAAAGGACATGATGTTTTGTGGGGTGTTTGATGGTCATGGTCCTCTAGGACACAAGTTTTCACAGTCTGTGCGTGACGAACTACCCTCAAAACTCTCAGCATCGATCAAACAGTCACAGCAAAAGGTAATCACACACAATGATACTAATGCTACAGAAGGAAGTAGTCATAGTAATGTCTATGTTGAGGATAACCAAAACATGTCATTTTCTTCATGGGAGGGAAGCTTTATGAGGTGCTTCAGTGAAATGGACGAAGACCTTGCTAAGAACATAGACAATAAAGGATTTAGTGGTGGTAGCACTGCTGTAACTGTTATCAAACAGGGTGACCAATTAATAATTGGCAATTTGGGGGATTCTCGTGCAGTTCTTTGCAGAAGAACACATGACAACCTTCTTGTTCCTGTTCAACTTACTGTTGACTTGACCCCAGATGTTCCAAGTGAAGCTTTAAGAATCATTAATTGTGGAGGTAGAATTTTTTCTGTAAAAGAAGAACCAAAAGTAAATAGAATATGGAGGCCAAAAGGGGAACGCCCTGGACTAGCTATGGCAAGAGCCTTCGGGAACTTTTGCCTAAAAGATTATGGTCTCATCTCAGCTCCCGATGTATCATACAGAAAACTTACCAAGCAGGACGAGTTTGTGGTTTTGGCTTCTGATGGGGTATGGGATGTGCTAACAAACAGTGAAGTGATAAACATAGTTGCTTCAGCACCAAAAAGGTCCATGGCAGCAAAATTGTTAGTGAACCATGCAGTTCAAGCTTGGAGACGTAAGTATGGTTTCCAGGTTGATGATTGTACAGCTATATGCTTGTTCCTCAAGGATTAG 1032 0.4157 MGGCCSCQVSVHDVECSSNHNHDDGACEHGGVMLRGSSEFVSMYSQKGSKGVNQDALTVWKDFTGRKDMMFCGVFDGHGPLGHKFSQSVRDELPSKLSASIKQSQQKVITHNDTNATEGSSHSNVYVEDNQNMSFSSWEGSFMRCFSEMDEDLAKNIDNKGFSGGSTAVTVIKQGDQLIIGNLGDSRAVLCRRTHDNLLVPVQLTVDLTPDVPSEALRIINCGGRIFSVKEEPKVNRIWRPKGERPGLAMARAFGNFCLKDYGLISAPDVSYRKLTKQDEFVVLASDGVWDVLTNSEVINIVASAPKRSMAAKLLVNHAVQAWRRKYGFQVDDCTAICLFLKD* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01292 343 Pfam Protein phosphatase 2C 98 321 IPR001932 -
Lapu10g01292 343 PANTHER PROTEIN PHOSPHATASE 39 339 IPR015655 GO:0004722|GO:0006470
Lapu10g01292 343 SUPERFAMILY PP2C-like 37 342 IPR036457 -
Lapu10g01292 343 Gene3D - 36 343 IPR036457 -
Lapu10g01292 343 SMART PP2C_4 30 339 IPR001932 -
Lapu10g01292 343 ProSiteProfiles PPM-type phosphatase domain profile. 40 341 IPR001932 -
Lapu10g01292 343 CDD PP2Cc 40 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01292 Lapu-Chr10 17557913 17560203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01292 30 343 PP2C-type Phosphatase Gene Family AT1G16220 48.060 4.86e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01292 - - vra:106755106 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01769 1 30703389 30706850 Lapu10g01292 10 17557913 17560203 PCT