Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01274 ATGGGACACAACAGTTGTTATGTCAAAGATTTCTACGCAGACCCTTTTCAGATTAACCTCTCTTTTGATTCATATGGTTATAGGAGGAGGAGATTGGGGAACAACCACAAAGGTGGTGGTTTTATTTGCTTAGCCTTTTTTGTGTTTCTTTTGCAAGCTTTGGCTTCTGTCATTCAGCCTGTTTCAGGGCAGTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTTCAAGCCCTGAGGGCTATAAAGAATGAGCTAATTGACTTCAAAGGGGTTCTTAAGAGCTGGAATGATAGTGGTCTTGGTGCTTGTTCAGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAATCTTCATGACAATGCTCTGGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCCAACCTTAGAGGAGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCGAGATCTACTAGGATATTTAGGATCAATTTGAGCTTCAACTCACTTTCTGGATCTATTCCTAGCACTTTAACTATGTCTCCTTCTCTAAGCGTTCTTGCCCTCCAACACAACAACCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCTCAGCTTCAAGTTTTGACCCTTGATCACAATCTCATTTCTGGAATCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATATCTCTTTGAGTCATAATCTGATTGTAGGGCCTATTCCAAGTGAACTAGGTGCCCTTTCCAGGCTTCAAATTCTTGATCTTTCACACAATGCCATCAATGGCAGCCTTCCTGCCAGCTTCTCTAACCTCTCTTCTCTAGTTTCATTAAACCTTGATAGCAATCAACTCGCAAACCATATTCCAGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAACAAGCTTGATGGCCAAATACCACCAACAATAGGGAACATCTCAAGCATTAGCCAAATCGATTTCTCTGAAAACAAATTAGTTGGAGGAATTCCAGATTCCCTCACCAAACTTGCAAATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTATATTTTCCAAAAGATTCAATGCTAGCTCTTTTGTAGGGAATATTGAGCTATGTGGGTACATCAGTTCAAAACCATGCGCTTCACCCCCTCCTCATAATCTTCCAGCTCAATCACCCCAGGCTCCTTCTAAGCCTCATCACCGCAAACTAAGCACCAAGGACATAATCCTCATTGTGGCTGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGTTATGTTGTTTGATCAGGAGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAGGCTGCTAAGGCTGCAGCATCAGCTAGGAGTGTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGACGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAAACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTAGGCAAAATCAGACACCCAAATCTCTTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGCCTGGCATCATTCCTTCATGCTCGTGGACCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAGTGATTGGAGTCACTAGGGGCTTGAGCTACCTTCATAGCCAAGAGAACATTGTACATGGGAATCTCACATCAAGCAACATACTATTGGATGAGCAAACGGACGCCCACATAACAGATTTTGGTCTCTCAAGGCTGATGACAACTTCTGCGAACACCAACATCGTTGCCACTGCAGGAAGCCTTGGCTACAATGCACCCGAGCTTTCAAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGTCTTGGTGTCATCATGTTGGAACTTCTAACTGGAAAGCCACCTGCGGAGCCAACCAATGGCATGGACTTGCCCCAATGGGTGGCATCCATAGTGAAGGAGGAGTGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAGCCATAGGGGATGAATTGCTTAACACATTGAAGTTAGCACTGCACTGTGTGGATCCATCTCCTGCTGCTAGGCCTGAAGTACACCATGTTCTGCAGCAATTGGAGGAGATCAAACCAGACTTGGCTGCAGGGGAGGAAGGAGCTACCAAGGTCCAAACAACTGAAACTGAGTAA 2568 0.4439 MGHNSCYVKDFYADPFQINLSFDSYGYRRRRLGNNHKGGGFICLAFFVFLLQALASVIQPVSGQLWDGVVVTQADFQALRAIKNELIDFKGVLKSWNDSGLGACSGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLNLHDNALAGPVPLSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPPSLARSTRIFRINLSFNSLSGSIPSTLTMSPSLSVLALQHNNLSGSIPDSWGGAGKKKASQLQVLTLDHNLISGIIPVSLGKLALLENISLSHNLIVGPIPSELGALSRLQILDLSHNAINGSLPASFSNLSSLVSLNLDSNQLANHIPDSLDRLHNLSVLNLKNNKLDGQIPPTIGNISSISQIDFSENKLVGGIPDSLTKLANLSSFNVSYNNLSGPVPSIFSKRFNASSFVGNIELCGYISSKPCASPPPHNLPAQSPQAPSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLIRRRTASSRKSGKAAKAAASARSVEKGASAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIVIGVTRGLSYLHSQENIVHGNLTSSNILLDEQTDAHITDFGLSRLMTTSANTNIVATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPAEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVHHVLQQLEEIKPDLAAGEEGATKVQTTETE* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01274 855 Pfam Leucine rich repeat 310 348 IPR001611 GO:0005515
Lapu10g01274 855 Pfam Protein tyrosine and serine/threonine kinase 568 832 IPR001245 GO:0004672|GO:0006468
Lapu10g01274 855 Gene3D Ribonuclease Inhibitor 328 454 IPR032675 -
Lapu10g01274 855 Coils Coil 854 855 - -
Lapu10g01274 855 Pfam Leucine rich repeat N-terminal domain 74 112 IPR013210 -
Lapu10g01274 855 CDD STKc_IRAK 570 835 - -
Lapu10g01274 855 ProSiteProfiles Protein kinase domain profile. 564 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g01274 855 PRINTS Leucine-rich repeat signature 311 324 - -
Lapu10g01274 855 PRINTS Leucine-rich repeat signature 189 202 - -
Lapu10g01274 855 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 264 835 - -
Lapu10g01274 855 SUPERFAMILY L domain-like 111 444 - -
Lapu10g01274 855 FunFam Leucine-rich repeat receptor-like protein kinase 550 640 - -
Lapu10g01274 855 Gene3D Phosphorylase Kinase; domain 1 570 641 - -
Lapu10g01274 855 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 72 253 - -
Lapu10g01274 855 Gene3D Transferase(Phosphotransferase) domain 1 642 851 - -
Lapu10g01274 855 Pfam Leucine Rich Repeat 189 207 IPR001611 GO:0005515
Lapu10g01274 855 SMART LRR_typ_2 138 161 IPR003591 -
Lapu10g01274 855 SMART LRR_typ_2 162 186 IPR003591 -
Lapu10g01274 855 SMART LRR_typ_2 311 334 IPR003591 -
Lapu10g01274 855 SMART LRR_typ_2 335 358 IPR003591 -
Lapu10g01274 855 SMART LRR_typ_2 407 430 IPR003591 -
Lapu10g01274 855 SMART LRR_typ_2 359 383 IPR003591 -
Lapu10g01274 855 SUPERFAMILY Protein kinase-like (PK-like) 568 837 IPR011009 -
Lapu10g01274 855 Gene3D Ribonuclease Inhibitor 212 327 IPR032675 -
Lapu10g01274 855 FunFam Pollen receptor-like kinase 1 641 845 - -
Lapu10g01274 855 Gene3D Ribonuclease Inhibitor 71 211 IPR032675 -
Lapu10g01274 855 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 257 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01274 Lapu-Chr10 17064025 17067728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01274 66 837 Receptor kinase-like Gene Family AT3G51740 69.666 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu10g01274 PK_Tyr_Ser-Thr 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01274 - - gmx:100799290 1399.8