Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01254 ATGGGAGAAAGCCGAGTCTCCCAATGTTCCAAGACAAGCCCTTCTAACATTGATGAAGAGGAGTGTGAAAGCCATGCCAATGAAGATCAAAGCAAGCAAAACAACAATGGAGGAAGCTCGAGTAACAGCACAGTGGAAGAGAGTGAGAAAAAGATTAGACCTTATGTTAGATCCAAGTTGCCAAGGCTTCGGTGGACACCCGATCTTCATCTTCGCTTTGTTCATGCCGTTCAACGACTTGGAGGACAAGAGAGAGCAACTCCTAAATTGGTTCTTCAATTGATGAACATGAAAGGTTTAAGTATTGCCCATGTCAAGAGTCATTTGCAGATGTTTAGGAGCAAAAAGGTGGATGACCGAAATCAAGTATTTTCCGATCATACCAGTCTTGTTGAAATTGGAGACAAAAATATTTATAATCTTAGCCAACTTTCGATGCTTCAAGGGTATAATCCCACTCCAAGTTCTTCTCACAGCTACACAAACAATAGCTATCCAAGTTACGGATTCGGGGATGCTTCTTTTGGTATCTACGGAAAACTTGTACACAGACCTTTGGATTGGTCTAACGGAATTTCTCGGCCAGGTTCATCCATTTTTTGTGAACAATCAACAAGCAAAACCCGTGAACCAAAATATGAGTTTTTCTCATTTGGTGCTTACGATTCTCTAAGCACAAGATTTGGCCACGTTGATCACACTCCCTCGATCAATATTATTCAACAAAGAGCACAAAACCTCATGCCTATAAATCCAACAACGGAAATGAAGACACTTAAAAGGAAGGCTCAAGATACATCACTTGATTTGGATCTGTCACTGAAACTAAGCACAAAGATGGATGCCGAAGGAACAAAATTGGCGGACAATGAAGTTCATAGCAACCTATCTCTCTCATTGTGCTCTCAATCCTCCTCTTCCAATCTTAGCAGCAGGTTGAAGGAAGCACAAGATCGATGTGAGCAACACAGGAAAAGGGCCAGTACTCTAGATCTGACTATATGA 1005 0.4149 MGESRVSQCSKTSPSNIDEEECESHANEDQSKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRSKKVDDRNQVFSDHTSLVEIGDKNIYNLSQLSMLQGYNPTPSSSHSYTNNSYPSYGFGDASFGIYGKLVHRPLDWSNGISRPGSSIFCEQSTSKTREPKYEFFSFGAYDSLSTRFGHVDHTPSINIIQQRAQNLMPINPTTEMKTLKRKAQDTSLDLDLSLKLSTKMDAEGTKLADNEVHSNLSLSLCSQSSSSNLSSRLKEAQDRCEQHRKRASTLDLTI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01254 334 FunFam Myb family transcription factor 59 117 - -
Lapu10g01254 334 MobiDBLite consensus disorder prediction 312 334 - -
Lapu10g01254 334 MobiDBLite consensus disorder prediction 1 15 - -
Lapu10g01254 334 MobiDBLite consensus disorder prediction 29 45 - -
Lapu10g01254 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Lapu10g01254 334 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 23 273 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lapu10g01254 334 Gene3D - 60 117 - -
Lapu10g01254 334 MobiDBLite consensus disorder prediction 314 334 - -
Lapu10g01254 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 116 IPR006447 GO:0003677
Lapu10g01254 334 Coils Coil 306 333 - -
Lapu10g01254 334 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Lapu10g01254 334 MobiDBLite consensus disorder prediction 1 53 - -
Lapu10g01254 334 Pfam Myb-like DNA-binding domain 63 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01254 Lapu-Chr10 16512323 16513799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01254 27 194 G2-like Transcription Factor Family AT2G42660 40.341 8.91e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu10g01254 Myb_DNA-binding 7.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01254 - - gmx:100801120 439.113