Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01247 ATGGATTACAGTCACCCTGCCTCATCTGCAGGATCCTCTTCTAAGACAAACGGAAGCAAGGAGAAAAAGGGTGTCAAGAAATGCAAAGGAGTGAGGCTCTCCACTGATCCTCAAAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTTCCTGGTGGAAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAACTCAGATTTGGCTCCACCAAACAATGATCAATTTCTTAGATGATAACGAGTCACTCTCTCCTATGTACCTTAGTGATTGCTACTTCCCTTCTGAACACTTCATTTCCCCTCAGCAAAATCCACCACTTGATCATAACATGCACAATATGCCTCATCTGCCACAACCACAATGCAGCTTCCATGGTGAAGACACAACCTACTTTGATGCCTCTTTGAAATATTGGCCTGCTTAA 483 0.4534 MDYSHPASSAGSSSKTNGSKEKKGVKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLDDNESLSPMYLSDCYFPSEHFISPQQNPPLDHNMHNMPHLPQPQCSFHGEDTTYFDASLKYWPA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01247 160 MobiDBLite consensus disorder prediction 1 42 - -
Lapu10g01247 160 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Lapu10g01247 160 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 152 IPR045843 GO:0003700|GO:0006355
Lapu10g01247 160 SMART finulus 39 88 IPR011598 GO:0046983
Lapu10g01247 160 MobiDBLite consensus disorder prediction 1 18 - -
Lapu10g01247 160 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 94 IPR036638 GO:0046983
Lapu10g01247 160 FunFam Transcription factor LAX PANICLE 36 99 - -
Lapu10g01247 160 Pfam Helix-loop-helix DNA-binding domain 43 83 IPR011598 GO:0046983
Lapu10g01247 160 CDD bHLH_AtIND_like 34 93 - -
Lapu10g01247 160 Gene3D - 37 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01247 Lapu-Chr10 16295564 16296046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01247 27 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.505 7.66e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g01247 HLH 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01247 - - pvu:PHAVU_010G073400g 265.003