Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01240 ATGGACATGATGGACGTGGACGGAACTTCTCCACCCAGAGAGGGGAAGCCCGTTTTGGTGATCCTGGTGGGAGCACCTGGGAGTGGCAAATCCACCTTTGGCGAAGAAGTAATGCGTTCCTCTACTCGCCCCTGGGTTCGCGTTTGCCAGGACACTATCGGAAATGGCAAAGCAGGAACTAAAGCTCAGTGCTTAAGCAGTGCAACCAGTGCATTGAAGGATGGGAAGAGTGTATTTATTGATAGGTGCAATCTTGACAGAGAACAGCGGTCAGAATTTATAAAGCTTGGTGGTGGACCCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTCTGTATTTCACGATCAGTCAAACGAACCGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTAAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGTTTTAACCGGATAACATTTTGTCAGAATGAGAATGATGTAAAAAATGCTATCAATACATATTGCTCACTTGGGCCACTGGATACACTTCCACATGGCTGCTTTGGTCAGAAGAATACAGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAAGCAGAGGTCCCACTTGCTGCTGCATCTACAAAGAGTGGTATTGAAGACCCTACTTCCCAGACTCTGATGAAAAATAATTCCTCCTGCAAAGATAAGGAAGCACTTTCCTCAATTTCAGATAAGGCCAAGTTAGAGACAAAGGAAGTAGAAGGCCAAGAGGTCGGCTCTGCTGGTTCCCATGCCAATCAAGTTTGTCTAGATGATATTCCCACTCTTGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCTTGAGAAGGCTGCTGATATTATTGTTGAGAAGGTTGCAGAGTTCTCAAATAAGTTTAGGAATGCCAGACTTGTTCTCGTTGACTTGTCTCATAAGTCAAAGATTCTGTCCTTAGTTAAAGCCAAAGTCGCTGAAAGAAACATGGACACCCAAAAGTTCTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGTAATGCCATTGCTAATGCTGCCAACTGGAGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAGTTTTTAATGCTGCAGGTCCTGAACTGGAGTCTGCAACAAAAGAAAAAGTAAAATCTCTTTCACCTGGGAATGCTGCTGTTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACCCGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCCAAGATGCTTATACTTCACTCTTTGAAGGTTTTGCATCTATTGTGAGGAACCAGCCAGGGATACCACTGGGAAAAAGTGAAAACCTTGAAAGGAAGTCTTTGGAGTTGCCAGTTCAGTCTGATTTTTCTTCCAGAAAATATTTTATAAATACTGATCAAAAGAGTAAGAGAGATGATGATCATGGATCAGAGAAAAGCAAGAAATACAAGGGAACTCAGGATGGCTTAGGATTGGTCTTTACTGACTCTAAGTATGAAAAGGTAGACTCTGAGCATAGAAGAGCTGAGAGGAGCAGAAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGGTGACTTGCTTGAAATTTCTGAAGATGTTGTTGTATTGAATGATATTTATCCAAAGGCACAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGATTGCCTCGCAGATGTCCAAAAGGAGCACCTTCAGTTATTGAACAAGATGCATGATGTGGGTTTAAAGTGGGCTGAGAATTTCTTGAACGAGAATGCTTCTATGGTCTTTCGTCTTGGATATCACTCGGCACCATCGATGCGACAGCTACATTTACATGTTATTAGCCAAGACTTTGAATCAACGCATTTAAAGAATAAGAAACACTGGAACTCGTTTACCACTGCTTTCTTTCGTGACTCGGTTGATGTAATGGATGAGATATCTAGTAATGGGAAGGCAACGTTGAAAGATGATGACAAGCTACTGTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCACATCCAAACATACCCCGGTTAAAATCTCATATCAGCAGCTGTCAATCCCCTTTTCCTGTTTACCTGCTTCAGAATGGACGTCTGGTGCATGCACCAGGGGAACCTCGTAACAGTGTCCAGTAG 2298 0.426 MDMMDVDGTSPPREGKPVLVILVGAPGSGKSTFGEEVMRSSTRPWVRVCQDTIGNGKAGTKAQCLSSATSALKDGKSVFIDRCNLDREQRSEFIKLGGGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFNRITFCQNENDVKNAINTYCSLGPLDTLPHGCFGQKNTDSKIQVGIMKFLKKAEVPLAAASTKSGIEDPTSQTLMKNNSSCKDKEALSSISDKAKLETKEVEGQEVGSAGSHANQVCLDDIPTLAFPSISTSDFQFNLEKAADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKVAERNMDTQKFFTHVGDITHLYSRGGLRCNAIANAANWRLKPGGGGVNAAVFNAAGPELESATKEKVKSLSPGNAAVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILQDAYTSLFEGFASIVRNQPGIPLGKSENLERKSLELPVQSDFSSRKYFINTDQKSKRDDDHGSEKSKKYKGTQDGLGLVFTDSKYEKVDSEHRRAERSRSKAWGSWAQALHQIAMHPEKHKGDLLEISEDVVVLNDIYPKAQKHVLVLARTGGLDCLADVQKEHLQLLNKMHDVGLKWAENFLNENASMVFRLGYHSAPSMRQLHLHVISQDFESTHLKNKKHWNSFTTAFFRDSVDVMDEISSNGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSPFPVYLLQNGRLVHAPGEPRNSVQ* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01240 765 MobiDBLite consensus disorder prediction 505 527 - -
Lapu10g01240 765 SUPERFAMILY Macro domain-like 272 323 IPR043472 -
Lapu10g01240 765 SUPERFAMILY HIT-like 559 723 IPR036265 -
Lapu10g01240 765 Pfam AAA domain 19 145 - -
Lapu10g01240 765 Pfam C2HE / C2H2 / C2HC zinc-binding finger 684 737 IPR032566 -
Lapu10g01240 765 Gene3D Leucine Aminopeptidase, subunit E, domain 1 324 471 IPR043472 -
Lapu10g01240 765 SUPERFAMILY Macro domain-like 326 465 IPR043472 -
Lapu10g01240 765 Pfam Scavenger mRNA decapping enzyme C-term binding 569 679 - -
Lapu10g01240 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 163 IPR027417 -
Lapu10g01240 765 Gene3D Leucine Aminopeptidase, subunit E, domain 1 228 323 IPR043472 -
Lapu10g01240 765 FunFam Transcription factor bHLH140 7 176 - -
Lapu10g01240 765 FunFam Transcription factor bHLH140 325 472 - -
Lapu10g01240 765 FunFam aprataxin isoform X2 560 740 - -
Lapu10g01240 765 ProSiteProfiles Macro domain profile. 332 512 IPR002589 -
Lapu10g01240 765 Gene3D - 561 742 IPR036265 -
Lapu10g01240 765 SMART YBR022w_8 344 486 IPR002589 -
Lapu10g01240 765 MobiDBLite consensus disorder prediction 506 527 - -
Lapu10g01240 765 Pfam Macro domain 367 450 IPR002589 -
Lapu10g01240 765 ProSitePatterns HIT domain signature. 648 666 IPR019808 -
Lapu10g01240 765 Gene3D - 5 176 IPR027417 -
Lapu10g01240 765 PANTHER APRATAXIN-RELATED 279 739 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01240 14 754 C2H2 Transcription Factor Family AT5G01310 59.784 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01240 K10863 - gmx:100786762 1314.67