Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01226 ATGAAGAATGCCAAGGGCAAGGGAGCACTAAAGGTCTCAAAGGAAGCACTGAAACCTGTTGATGACCGAAAGGTTGGAAAGCGAAAGGCTTCTAGTAAGCCTGATAAGGGCAGTGCACCAAAGACAAAGAAGGAGAAGAAGGCCAAGAAAGATCCCAACAAGCCTAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGGAAAACCTTTAAGGCTGAGAATCCTAACGTGAAGGCTGTATCTGCGGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTATCCAGTGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATGAAAGCTTATGATAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCTGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGTGCAGAGGACCACCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGATGAGGATGATGACTGA 516 0.4535 MKNAKGKGALKVSKEALKPVDDRKVGKRKASSKPDKGSAPKTKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDEASAEDHQEEEEEEEEEEDEDDD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01226 171 Coils Coil 145 165 - -
Lapu10g01226 171 MobiDBLite consensus disorder prediction 1 59 - -
Lapu10g01226 171 MobiDBLite consensus disorder prediction 87 111 - -
Lapu10g01226 171 PRINTS High mobility group (HMG1/HMG2) protein signature 17 37 - -
Lapu10g01226 171 PRINTS High mobility group (HMG1/HMG2) protein signature 89 108 - -
Lapu10g01226 171 PRINTS High mobility group (HMG1/HMG2) protein signature 108 128 - -
Lapu10g01226 171 MobiDBLite consensus disorder prediction 123 138 - -
Lapu10g01226 171 Pfam HMG (high mobility group) box 55 123 IPR009071 -
Lapu10g01226 171 MobiDBLite consensus disorder prediction 139 171 - -
Lapu10g01226 171 SUPERFAMILY HMG-box 40 124 IPR036910 -
Lapu10g01226 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 159 IPR031061 -
Lapu10g01226 171 SMART hmgende2 54 125 IPR009071 -
Lapu10g01226 171 CDD HMG-box_AtHMGB1-like 56 116 - -
Lapu10g01226 171 MobiDBLite consensus disorder prediction 8 56 - -
Lapu10g01226 171 Gene3D High mobility group box domain 38 141 IPR036910 -
Lapu10g01226 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Lapu10g01226 171 MobiDBLite consensus disorder prediction 123 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01226 Lapu-Chr10 15653237 15656854 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lapu10g01226 HMG_box 1.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01226 K25507 - gmx:100499704 173.711