Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01224 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTGTTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGGGCCTGCTTACAGATGAGATTGTCTTATAGTCCAGTTGCTCAATTTTTTCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAGAGAAAGACCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAAGAGTTATGTGCTACAAAGTACATGCCCAGAGATATAATAAGAAAAGGAAAACTATCTGCAATTGATATTGAGAGAGAAGAAGAATGCGGCATCTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAATTGCAACCACACGTTGTGTATGAAATGCTACAGAAAATGGCATACAAGATCTCAATCTTGTCCTTTCTGTCGGGACAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACATGAACAGCAATGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTGTGTCAGATCCTTCATTGATGTCTTATCCTCCTCAGCGCTTTTGA 729 0.4005 MRKSFKDSLKALEADILFANTLASDYPRESDGACLQMRLSYSPVAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKTSLKDFYGVIFPSLLQLHRGITDVEERKQKELCATKYMPRDIIRKGKLSAIDIEREEECGICMEMNNKVVLPNCNHTLCMKCYRKWHTRSQSCPFCRDSLQRVNSGDLWIYMNSNEINDLASINKENLKRLFTYVDKLPLIVSDPSLMSYPPQRF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01224 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Lapu10g01224 242 SUPERFAMILY RING/U-box 136 189 - -
Lapu10g01224 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 190 - -
Lapu10g01224 242 FunFam RING/U-box superfamily protein 128 193 - -
Lapu10g01224 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Lapu10g01224 242 SMART ring_2 146 183 IPR001841 -
Lapu10g01224 242 PANTHER RING FINGER PROTEIN 41, 151 3 235 - -
Lapu10g01224 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01224 Lapu-Chr10 15629021 15633546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01224 94 184 C3H Transcription Factor Family AT5G01960 31.250 8.57e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01224 K25840 - pop:7466068 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g01224 10 15629021 15633546 Lapu10g01224 10 15629021 15633546 ECH