Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01219 ATGGAGGTGATGGAGAATGGTGGTGCAAACATGAAGGGGTTGAGCAAGGAAGTTAGACATGGAAGAACAGCACATAACATGTCATCTTCTTCATTGCGCAAGAAGTCTGATCTCACTCTTGTGTCTAAGGTTAGTTCTGGCCCTCTCAAGAACGTGTTGCTGAACATTCAGGAGGTTATTTTGGGGACCAAGCTCTCTATTCTCTTCCCAGCTGTTCCCATTGCCATAGTTGCTCAATGCTATGGATTTGCAAAACCTTGGGTTTTTGCATTGAGCTTACTGGGGCTTACCCCACTTGCTGAAAGACTCAGTTTCTTGACAGAACAGATTGCCTGTTACATTGGTCCCACAGTGGGAGGACTTATGAATGCAACATGTGGGAATGCTACAGAGCTGGTCATAGCAATTTTTGCCCTTAGCCATAACAACATTGCTTTGGTCAAATATTCTCTCCTGGGTTCCATAATTTCTAACCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGAGGCCTTGTAAACCTTAGGCAGGAACAGAAATATGATAGAAGACAGACAGATATGAACTTGCTTATGTTATTTCTAGCATTGCTATGCCACTTGCTGTCAATGCTGTTCCATTATGCTGGTGCCTCAGAAGGTGCCACTGCAGAATCATCTCTGCAGTTGTCAAGAGCTGCTAGCATTATTATGGTGATAGCATATTTTTCCTACCTTGTGTTCCAGCTGTGGACTCACAGACAACTATTTGAAGACCCGGATGAAAATGAAGAAGAGGGTGACAATGATTCAGAAGAAGCAGTGATAGGATTCTGGAGTGGGTGTGTTTGGCTGGTTGGGATGACGGTGATAATTGCGGTGCTGTCTGAATATGTGGTGCAAACAATTGAGGATGCATCTAATTCATGGGGTTTGTCTGTTAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGCAATGCAGCTGAACATGCTGGAGCAATTATATTTGCTTTCAAGAACGAACTGGACATCTCCTTGGGTGTTTGTTTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCCCTTTGTGTGATTATTGCTTGGATTCTGGGAGTACAAATGGACCTCAACTTCAACCTCCTAGAGACAGGTTCTCTTGCTTTGGCAATAATAACCACAGCCTTCGCATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTGCTCTTCCTGTGTTACATTGTTATTGGGGCATGCTTTTTCGTACAAAGAACACCCTCCAACCAAAATAATGCTTCTAACATAGTGCTCAACTCAGCAAGCGAAGCAGTTTTTGGAGCTTAA 1332 0.4347 MEVMENGGANMKGLSKEVRHGRTAHNMSSSSLRKKSDLTLVSKVSSGPLKNVLLNIQEVILGTKLSILFPAVPIAIVAQCYGFAKPWVFALSLLGLTPLAERLSFLTEQIACYIGPTVGGLMNATCGNATELVIAIFALSHNNIALVKYSLLGSIISNLLLVLGTSLFCGGLVNLRQEQKYDRRQTDMNLLMLFLALLCHLLSMLFHYAGASEGATAESSLQLSRAASIIMVIAYFSYLVFQLWTHRQLFEDPDENEEEGDNDSEEAVIGFWSGCVWLVGMTVIIAVLSEYVVQTIEDASNSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNELDISLGVCLGSATQISMFVVPLCVIIAWILGVQMDLNFNLLETGSLALAIITTAFALQDGTSHYMKGLVLFLCYIVIGACFFVQRTPSNQNNASNIVLNSASEAVFGA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01219 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 422 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lapu10g01219 443 Gene3D - 116 258 IPR044880 -
Lapu10g01219 443 Gene3D - 261 417 IPR044880 -
Lapu10g01219 443 MobiDBLite consensus disorder prediction 1 31 - -
Lapu10g01219 443 FunFam Vacuolar cation/proton exchanger 116 261 - -
Lapu10g01219 443 NCBIfam calcium/proton exchanger 50 417 - -
Lapu10g01219 443 Pfam Sodium/calcium exchanger protein 86 244 IPR004837 GO:0016020|GO:0055085
Lapu10g01219 443 Pfam Sodium/calcium exchanger protein 276 412 IPR004837 GO:0016020|GO:0055085
Lapu10g01219 443 NCBIfam calcium/proton exchanger 70 417 IPR004798 GO:0006816|GO:0015369
Lapu10g01219 443 FunFam Vacuolar cation/proton exchanger 262 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01219 Lapu-Chr10 15547979 15551876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01219 3 425 Antiporters AT2G38170 66.744 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01219 K07300 - gmx:100782052 681.404