Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01206 ATGCAAATGGCTTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCCCGAAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAGACTTGGGAGGTGACTTTGCCGGCAGAGGAAGTTCCGCCCGAGCTTCCAGAGCCTGCGCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGCGATTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATCAATGATCTTCCTACCGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGGTTAATTTTGTTAGATCGAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGAGGAAGGTTATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGTAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGGCCCTAA 732 0.4863 MQMASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKVNFVRSSDGQVKSNPKFAEEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01206 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Lapu10g01206 243 MobiDBLite consensus disorder prediction 137 180 - -
Lapu10g01206 243 CDD PHD_AL_plant 189 239 IPR044104 -
Lapu10g01206 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Lapu10g01206 243 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lapu10g01206 243 SUPERFAMILY FYVE/PHD zinc finger 178 241 IPR011011 -
Lapu10g01206 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 237 IPR013083 -
Lapu10g01206 243 MobiDBLite consensus disorder prediction 148 169 - -
Lapu10g01206 243 Pfam PHD-finger 190 237 IPR019787 -
Lapu10g01206 243 PANTHER CPG BINDING PROTEIN 6 242 IPR045104 GO:0006355|GO:0042393
Lapu10g01206 243 SMART PHD_3 189 237 IPR001965 -
Lapu10g01206 243 FunFam PHD finger alfin-like protein 182 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01206 Lapu-Chr10 15339463 15342907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01206 4 242 Alfin-like Transcription Factor Family AT5G05610 76.667 7.32e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lapu10g01206 Alfin 2.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01206 K26274 - gmx:100779170 469.544