Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01135 ATGGAACCAGAAGAAACCGCCGTCACCGCCGTCGATGGAAGTGGCGACGAGGGACTGCTGGCGTTAGACGGCAGCGATGTTGGCAGCGGCAAGGACAGAGTGAAGGGCCCTTGGTCTCCGGAAGAGGACGCCATTCTAAGTCGTCTCGTTAGTAAGTTCGGGGCCAGAAACTGGAGCCTCATCGCGCGTGGGATCAGTGGAAGATCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAACCAGCTCGACCCCTCCGTTAAGCGCAAGCCCTTCACCGATGAGGAGGACAGAATCATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCTGGAAGAACGGATAATGCCATTAAGAACCACTGGAATTCAACTTTGAGGCGTCGGGGAGTTGAACTTGACAAGATTAAATTAGAATCTGGTAACTTCATGGAAGATGTTAGCTTGGAGAAAGCGAAAGCATCCTCGGAAGATACTCTGTCCTGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTGTGGAGATCATGGATGATAAATCTGATGGTAAAGCACAAGCTGAGGGCCAATTACACCACAAAGTCAAGGATCCACCTACCCTTTTTCGGCCAGTAGCTCGTGTAAGTGCTTTCAATGTTTATCACTCATATGATGTTATACAGCCTTCAACATCAATTCAAAGACCTGTCTCGATGCAAGGACCCATTTTACAATCGTCAAGACCAGATATGGAATTTTGTAGGATGCTTGAAAGAATTTGTGGTGACCAGGCAGTGCCTCAACAGTGTGGGCATGGTTGCTGTGCTTCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCGGAATTCATTGAATTTTCTGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATCGCTGCAGACATCAGTAACCTCGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTGCAAATGATGGGAAACACCTCTAGCAGTGCAATGTCTAATGGATCTCGAGTACATATTGGCCATTAG 1059 0.4844 MEPEETAVTAVDGSGDEGLLALDGSDVGSGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDVSLEKAKASSEDTLSCGDVSLKSSEGRDVSSVEIMDDKSDGKAQAEGQLHHKVKDPPTLFRPVARVSAFNVYHSYDVIQPSTSIQRPVSMQGPILQSSRPDMEFCRMLERICGDQAVPQQCGHGCCASPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVQMMGNTSSSAMSNGSRVHIGH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01135 352 FunFam MYB transcription factor 35 86 - -
Lapu10g01135 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
Lapu10g01135 352 SMART sant 34 83 IPR001005 -
Lapu10g01135 352 SMART sant 86 134 IPR001005 -
Lapu10g01135 352 CDD SANT 37 79 IPR001005 -
Lapu10g01135 352 Gene3D - 89 135 - -
Lapu10g01135 352 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Lapu10g01135 352 Pfam Myb-like DNA-binding domain 38 95 - -
Lapu10g01135 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Lapu10g01135 352 MobiDBLite consensus disorder prediction 1 38 - -
Lapu10g01135 352 Gene3D - 34 86 - -
Lapu10g01135 352 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Lapu10g01135 352 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Lapu10g01135 352 PANTHER MYB PROTEIN-RELATED 35 194 - -
Lapu10g01135 352 CDD SANT 89 132 IPR001005 -
Lapu10g01135 352 FunFam Transcription factor MYB44 89 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01135 Lapu-Chr10 13848288 13855038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01135 31 352 MYB Transcription Factor Family AT3G09230 51.351 2.59e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g01135 Myb_DNA-bind_6 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01135 K09422 - gmx:100813406 629.017