Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01127 GAGGGGCTGCTTAGTTTAGATGGCGGCGATGGTGGCGATGGCGGCAGGGACAGAGTGAAGGGTCCTTGGTCACCGGAAGAGGACGCCATTCTGAGTCGCCTCGTCAGCAAGTTCGGCGCCAGAAACTGGAGCCTTATCGCGCGCGGGATCAGCGGAAGATCCGGCAAGTCTTGCCGGCTTCGCTGGTGCAACCAGCTCGACCCCTCCGTAAAGCGGAAGCCATTCACCGATGAGGAGGACCGCATTATAGTTGCTGCACATGCAATCCATGGGAACAAATGGGCGGCCATTGCCAGGCTTCTACCTGGAAGAACAGATAATGCCATTAAGAATCACTGGAATTCCACTTTGAAGCGTCGGGGAGTCGAACTTGATAAAATTAAATTAGAATCTGGTAACTTCATGGAAGATGTTAGCCTAGAGAAAGCAAAAGCTTCCTCGGAAGACACTCTATCTTGTGGGAATGTTTCTCTGAAATCCTCAGAAGCGAGAGATGTCAACTCTATGGAGATCATGGGTGATAAATCTGATGACAAATCACAAGCTGAGGGTCAATTACACCACGAAGTCAACGATCCACCAACCCTTTTTCGTCCAGTAGCACGCGTCAGTGCTTTCAATGTATATAACTCATTTGATGGTATACAGGCTTCAACATCAATTCAAAGATCTGCTCCGATGAAAGGACCCATTTTACAATCATCAAAACCAGATATGGAATTTTGTAGAATGCTTGAGGGAATTTGTGGTGACCAGTCAGTGCCTCTCCAGTGTGGCCATGGTTGCTGTGCTCCAATTGGTAGAAAGTTCGAAAGCTCTTTGATGGGACCAGAATTCATTGAATTTTCTGAACACCCATCTTTCCCTAATTTTGAATTGGCTACAATTGCTACAGACATTACTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGTCAAAATTATGGCAAACACCTCTGGCACTGTAATGTCTAATGGATCTCAAGTTCATATTGGCCATAGAGTGCCAAATATATCATCATTCTTATTCTGA 1041 0.4601 EGLLSLDGGDGGDGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRGVELDKIKLESGNFMEDVSLEKAKASSEDTLSCGNVSLKSSEARDVNSMEIMGDKSDDKSQAEGQLHHEVNDPPTLFRPVARVSAFNVYNSFDGIQASTSIQRSAPMKGPILQSSKPDMEFCRMLEGICGDQSVPLQCGHGCCAPIGRKFESSLMGPEFIEFSEHPSFPNFELATIATDITNLAWLKSGLESSSVKIMANTSGTVMSNGSQVHIGHRVPNISSFLF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01127 346 Gene3D - 19 71 - -
Lapu10g01127 346 FunFam Transcription factor MYB44 74 120 - -
Lapu10g01127 346 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Lapu10g01127 346 Gene3D - 74 120 - -
Lapu10g01127 346 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Lapu10g01127 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Lapu10g01127 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Lapu10g01127 346 PANTHER MYB PROTEIN-RELATED 20 174 - -
Lapu10g01127 346 CDD SANT 22 64 IPR001005 -
Lapu10g01127 346 MobiDBLite consensus disorder prediction 1 24 - -
Lapu10g01127 346 Pfam Myb-like DNA-binding domain 23 80 - -
Lapu10g01127 346 SMART sant 71 119 IPR001005 -
Lapu10g01127 346 SMART sant 19 68 IPR001005 -
Lapu10g01127 346 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Lapu10g01127 346 FunFam MYB transcription factor 20 71 - -
Lapu10g01127 346 CDD SANT 74 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01127 Lapu-Chr10 13708483 13714296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01127 9 336 MYB Transcription Factor Family AT3G09230 51.471 2.59e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g01127 Myb_DNA-bind_6 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01127 K09422 - gmx:100811740 577.785