Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01126 ATGGAGTTTGATCCTTGCTTCCAAGGGCCACAGTACCTTTCAAGTGTTTTTTCCAGAAACCCTTACTTGAAGCCACCTACTCAAAACATGTTTCCTCCATCCCAAAGCTCCATTCTCATTCCACCATCTCAACCCATCATGTTCCACCCTAACCATGCTTTCCACCATTTTCAAGACCCCATCGTGAATGTGCCTGCAAACAACCCTGCGTTTGTGATGAACGGTTCCAACCACATCACCACCCCCATGTATGGGAATGGGATACCAAACCCTTCTTTGGGTGATGGGTCGTCTTCCCTAGCAGCAGGCTTTGCTAACATTAACAGTCACCAGCCTGTGATGTTAGCACCAAAGAACAACAACAACATCAACAAAATTGAAGCTTTGTATGACCAGAACAAAGGCAAAGTCATATGGGACTTTTCCCAGAAAACCATGGTTCATCCTTTTGAAGCTTCTTCTTCCAAGTCACCATCACCTTTCTGTCTCTCCAATGAGTATGGATTGGGTATGAGTGGATTTCACAGGGACTCTGATCAAAGGATGGTAGAGGTGGAAAACAATACCAACAATGCTAATGATAATATAATCAAAGGGCAGTGGACTCCCGAAGAAGACAGTGCTCTTGTGGAGTTGGTGAATCAATTTGGACCAAAGAAATGGTCAGAAATTGCAAAGTTGATGTGCGGCAGAGTTGGAAAGCAGTGTCGAGAAAGATGGCACAATCATCTCCGGCCAAACATTAGGAAGGACTCGTGGACCCTGGAGGAAGACATGATTCTGATAAAAGCTCACCAGGAATTCGGAAATAGGTGGTCGGAGATTGCTAAAAGGCTACCTGGGAGGACTGAAAATACTATCAAGAACCATTGGAATGGAACGAAGCGACGCCAGAGTTACAAGACATACAACAGGAATAAGAACAACCCTTATGAAGGATCAATGCTCCGTGCTTATGTTAAAAGGGTCACTGCTACTGAAGAAGCTGCAAAAGTGCTAAAGAAACCCATACGCAAAAAGAATAAGAAGGTGCTGAGATCCAATCGTGAAGGTGTAGCACCTTTGTTGAGGTTTGATCCACGTACAAATGAAATGCTCATTGGAAGTAGCAGCAACTATGCGCCAATGCAAGTTAATAATAACAACGTTGGGGTTTCCTATGGTGCAATTGGAAAGAGTGCAATGAACAGGGGAATGAATGAGATGATAAGTGGAAGATACTGA 1224 0.4395 MEFDPCFQGPQYLSSVFSRNPYLKPPTQNMFPPSQSSILIPPSQPIMFHPNHAFHHFQDPIVNVPANNPAFVMNGSNHITTPMYGNGIPNPSLGDGSSSLAAGFANINSHQPVMLAPKNNNNINKIEALYDQNKGKVIWDFSQKTMVHPFEASSSKSPSPFCLSNEYGLGMSGFHRDSDQRMVEVENNTNNANDNIIKGQWTPEEDSALVELVNQFGPKKWSEIAKLMCGRVGKQCRERWHNHLRPNIRKDSWTLEEDMILIKAHQEFGNRWSEIAKRLPGRTENTIKNHWNGTKRRQSYKTYNRNKNNPYEGSMLRAYVKRVTATEEAAKVLKKPIRKKNKKVLRSNREGVAPLLRFDPRTNEMLIGSSSNYAPMQVNNNNVGVSYGAIGKSAMNRGMNEMISGRY* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01126 407 Gene3D - 197 249 - -
Lapu10g01126 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 299 IPR017930 -
Lapu10g01126 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 248 IPR017930 -
Lapu10g01126 407 Pfam Myb-like DNA-binding domain 201 258 - -
Lapu10g01126 407 ProSiteProfiles Myb-like domain profile. 193 244 IPR001005 -
Lapu10g01126 407 PANTHER MYB PROTEIN-RELATED 167 312 - -
Lapu10g01126 407 ProSiteProfiles Myb-like domain profile. 245 295 IPR001005 -
Lapu10g01126 407 SMART sant 249 297 IPR001005 -
Lapu10g01126 407 SMART sant 197 246 IPR001005 -
Lapu10g01126 407 FunFam Transcriptional activator Myb isoform A 197 250 - -
Lapu10g01126 407 CDD SANT 201 244 IPR001005 -
Lapu10g01126 407 SUPERFAMILY Homeodomain-like 195 291 IPR009057 -
Lapu10g01126 407 CDD SANT 252 292 IPR001005 -
Lapu10g01126 407 Gene3D - 252 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01126 Lapu-Chr10 13691534 13696638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01126 196 323 MYB Transcription Factor Family AT4G18770 59.375 2.17e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g01126 Myb_DNA-bind_6 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01126 K09422 - vra:106773360 509.605