Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01123 ATGTCAAGTTCTCATATGTGTCATGTGGATTTGGAGCAAGGGAATCACCAGCGTTCTGTGAGTGGCAGTGACATGAGCATGCGCTCTTCTGATGCTGAGAATGGTTCCTGCTACTCCCATTTCTATTCAACGAATGATGACCATTATGATGATTACACCTTTGCATGTGTTTCTGATGCGGAGGGTGAGGGTGCTGCTGATTCCCAGAGGGCTTCTTCTGTTACTGATTGTTCAGTGGAGCTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGTTGCATTTGGCTAAAGTGGAGAGGGCTTGCAGGATTTGTCATCTTGGTTTGGATAGTGATAGTCAAGACTTTGGAGTTCCCATTCAATTGGGGTGTTCTTGTAAGGATGATTTGGGTGTCGCTCACAAGAAGTGTGCAGAGACCTGGTTTAAGATTAAGGGGAACAGGACATGTGAAATATGTCATTCTGTTGCACGGAACATTGGTGGGACAAATGAGGAGAGAACTCAGAGTTTGAGTGACAGCAACAACAGTAGTGCAGCATCCACAATCTCAACAGCAGCTCCTCCACCAGAAACTCGAACATTTTGGCACGACAATCGCTTCCTCAATTTTTTGCTTGCTTGTATAGTTTTTGCATTTGTAATATCATGGCTTTTTCACTTCAACATGCCCTCATCTTAG 678 0.441 MSSSHMCHVDLEQGNHQRSVSGSDMSMRSSDAENGSCYSHFYSTNDDHYDDYTFACVSDAEGEGAADSQRASSVTDCSVELEIESGVPEIKLHLAKVERACRICHLGLDSDSQDFGVPIQLGCSCKDDLGVAHKKCAETWFKIKGNRTCEICHSVARNIGGTNEERTQSLSDSNNSSAASTISTAAPPPETRTFWHDNRFLNFLLACIVFAFVISWLFHFNMPSS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01123 225 SUPERFAMILY RING/U-box 98 155 - -
Lapu10g01123 225 PANTHER ZINC FINGER, RING-CH-TYPE 13 224 - -
Lapu10g01123 225 MobiDBLite consensus disorder prediction 163 186 - -
Lapu10g01123 225 ProSiteProfiles Zinc finger RING-CH-type profile. 93 159 IPR011016 GO:0008270
Lapu10g01123 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 161 IPR013083 -
Lapu10g01123 225 SMART ringv_2 100 153 IPR011016 GO:0008270
Lapu10g01123 225 MobiDBLite consensus disorder prediction 1 28 - -
Lapu10g01123 225 Pfam RING-variant domain 101 152 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01123 Lapu-Chr10 13646034 13649357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01123 59 225 C3H Transcription Factor Family AT5G05830 53.571 5.33e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01123 - - pvu:PHAVU_010G005300g 339.347