Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01120 ATGGAGTTGGCTTCTTCATCATCATCATCGTCATCTTCATCCTTCTTAAAGTCAGAACCCCAGTTCATATACGATGTGTTCATCAACTTCGGGGAAGAAGACATCGGTAGAAAGTTCGCTTCTCATCTCCATTATGCCCTTTTACAAGCTCAAGTCAAAGCTTTGGTTGGCGAGGAGAATCTGCAGGATGGAATGAAGCTGGAAGAACACATGCGAGCAATAGCAGCCTCTAAGATTGCAATAATTGTTTTCTCTAACCAATACACTGAATCTACTTGGTGTCTTCGTGAGCTTGAAAAAATCATTGAACACCACGAAACTTTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTCAATGTACGTAATCAGAAGGGTGATTTTGGAAAAGCGTTGGAAGAAGTTGCACAGAAAAACTATTCAGGAGAACAACTGGAAGATGCCTTGTCCAGGTGGAGCCGTGCACTCACCAAAGCTGCAGGTATCACTGGTTGGGATGTCAGAAATTTCAGGCATGATGCTGAACTTGTGGAGGTAATTGTTAGCCGCGTTCGGACATTACTAGACTATAAAGACTTGTTTACTGCACGATTTCCTGTTGGATTAAACTCCCACGTGGAAAAGGTGATTGGATGTATTGAAAATCAATCCACCAAAGTGTGTATCGTAGGGATCTGTGGAATGGGAGGATCGGGTAAAACTACAATAGCCAAAGCCATCTATAATCGAATCTATCGTACATTCATTGGTAAGAGTTTTATCGAAAATATCAGTGAAGTTTGTGATCGAGTAAATAGAAGGCATGTTCATTTCCAAGAGAATCTTCTTTATGATGTCCTAAAATCCAAGCTCAAGGTGAAAAACGTTGTGAAGGGAAGAACTATGATCGAGAAAGGACTTTATCGGAAAAAGTTGCTTATTGTTCTAGATTATGTGGATAGGTTTGTCCAATTAGAAGACTTATGTGGGAATCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATGTTCGTCTACTGAACCAACTCAAAGTTAATTATGTTTATAAAATGGATGATATGAACGAAAGTGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAGAAGACTTCAATGAACTTGCAAGAAACGTAGTTACTTATTGTGGAGGAGTACCACTAGCTTTTGAGATCCTTGGTTCCTATTTAAGAGATAAGACAAAGGAAGAGTGGAAAAGTGTAGTTTCAAAACTATAA 1275 0.3953 MELASSSSSSSSSSFLKSEPQFIYDVFINFGEEDIGRKFASHLHYALLQAQVKALVGEENLQDGMKLEEHMRAIAASKIAIIVFSNQYTESTWCLRELEKIIEHHETFGQIVLPVFYEIDPFNVRNQKGDFGKALEEVAQKNYSGEQLEDALSRWSRALTKAAGITGWDVRNFRHDAELVEVIVSRVRTLLDYKDLFTARFPVGLNSHVEKVIGCIENQSTKVCIVGICGMGGSGKTTIAKAIYNRIYRTFIGKSFIENISEVCDRVNRRHVHFQENLLYDVLKSKLKVKNVVKGRTMIEKGLYRKKLLIVLDYVDRFVQLEDLCGNREWFGQGTVIIITTRDVRLLNQLKVNYVYKMDDMNESDSLELLSWHAFREAKPREDFNELARNVVTYCGGVPLAFEILGSYLRDKTKEEWKSVVSKL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01120 424 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 424 IPR044974 GO:0006952
Lapu10g01120 424 Pfam NB-ARC domain 207 424 IPR002182 GO:0043531
Lapu10g01120 424 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 168 IPR035897 -
Lapu10g01120 424 Gene3D - 18 196 IPR035897 -
Lapu10g01120 424 Pfam TIR domain 24 187 IPR000157 GO:0007165
Lapu10g01120 424 Gene3D - 197 356 IPR027417 -
Lapu10g01120 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 424 IPR027417 -
Lapu10g01120 424 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Lapu10g01120 424 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Lapu10g01120 424 Gene3D - 360 424 IPR042197 -
Lapu10g01120 424 SMART till_3 23 165 IPR000157 GO:0007165
Lapu10g01120 424 PRINTS Disease resistance protein signature 302 316 - -
Lapu10g01120 424 PRINTS Disease resistance protein signature 395 409 - -
Lapu10g01120 424 PRINTS Disease resistance protein signature 225 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01120 Lapu-Chr10 13591924 13593309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01120 24 414 WRKY Transcription Factor Family AT4G12020 27.273 4.02e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01120 - - vun:114166788 588.571