Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01092 ATGAAGGAAAGGCAACGTTGGAAGGCTGAAGAGGATGCATTGTTATGTGCTTATGTGAGAGAGTATGGTCCAAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACCCCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAAAAAGGGTCTCTAACGGAGGAAGAGCAGCGCCTTGTGATTCGGCTTCAAGAGAAACACGGCAACAAGTGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAGGAGAAGCAGCAAAGAGAGAAACAAGAGACTAACAAAGCAATTGGCTCAGCTGATAATACCAAATATGATCATATTCTAGAGACTTTTGCTGAGAAACTAGTGAAAGAACACTCTTCTTCACGATCATCATACCTTATGACTGCTTCTAATGGACCCTTTATCCGCTCTGATGCACATGCAACTACTTATGTACCTGCATCTGCATCAGCATCATCAGCAATAGCATTGCTTCCTTCTTGGCTTTCAAATTCTAGCACCACCAGTCCCTCACCAGCAATTAGGCCACCTTCCCCTTTTGTGACACTTACTCTCTCCCCCACAACAACACCTTCTCCACCTTTGTTGAATATAGCAACACCTCATGGTAATAACATGGTAGTGTTAGAGTTAATAGAGTGTTGTAAGGAGTTGGAAGAAGGGCATTATGCTATGGCTGCACAACGAAAGGAGGCGGCGTGGCTGTTGAAAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCAAGCAAAAGGAGGGAAAAGATGGATGAAATTGAAGCAAAGATTAAGGCTTTAGTGGAAGAGCAGAATGCTGCTTTGGATAGGATAGAAGCAGAATATAGAGAACAGTTAGCAGGGTTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTGGAGCAATGGAATGCAAAGCACATAAGGGTAGTGAAGTGTATGGAACGACATGTAGGATGCAGAATACCCCGAATTGCTGAGTCTAATGATAGATAA 1062 0.4482 MKERQRWKAEEDALLCAYVREYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQETNKAIGSADNTKYDHILETFAEKLVKEHSSSRSSYLMTASNGPFIRSDAHATTYVPASASASSAIALLPSWLSNSSTTSPSPAIRPPSPFVTLTLSPTTTPSPPLLNIATPHGNNMVVLELIECCKELEEGHYAMAAQRKEAAWLLKRVELQLEAEKASKRREKMDEIEAKIKALVEEQNAALDRIEAEYREQLAGLRRDAESKEQKLVEQWNAKHIRVVKCMERHVGCRIPRIAESNDR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01092 353 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lapu10g01092 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Lapu10g01092 353 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 347 - -
Lapu10g01092 353 Coils Coil 261 320 - -
Lapu10g01092 353 Gene3D - 62 126 - -
Lapu10g01092 353 Pfam Myb-like DNA-binding domain 7 67 - -
Lapu10g01092 353 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lapu10g01092 353 SMART sant 58 106 IPR001005 -
Lapu10g01092 353 SMART sant 3 55 IPR001005 -
Lapu10g01092 353 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lapu10g01092 353 CDD SANT 6 53 IPR001005 -
Lapu10g01092 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lapu10g01092 353 FunFam MYB-related transcription factor 4 58 - -
Lapu10g01092 353 CDD SANT 63 104 IPR001005 -
Lapu10g01092 353 Gene3D - 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01092 Lapu-Chr10 13096443 13099473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01092 1 346 MYB Transcription Factor Family AT2G37630 58.311 1.13e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g01092 Myb_DNA-bind_6 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01092 K09422 - zju:107430642 435.261