Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01091 ATGAAGGAGAGACAACGTTGGAGAGCTGACGAGGATGCTTTATTACGTTCTTATGTCAAACAGTATGGTCCAAGGGAATGGAATCTTGTGTCTCAGCGGATGAACACCCCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGGTCTCTTACCGAAGAGGAGCAGCGCCTTGTAATCCGGCTTCAAGCAAAATACGGCAACAAATGGAAGAAAATTGCAGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAACAACAAAGAGAGAAGAAGGAGCTCAATAGAATCCCTGACCCGATTAACAACAATAAGTATGAGCACATACTTGAGAGTTTTGCAGAAAAACTAGTAAAGGAACAACATCCTTCACCGTCATTTGTTATGGCTACTTCTGATGGGACATTTCTGCGCACTGATACACCAGCACCTGCATCAGCCTTGCTTCCTTCTTGGCTTTCCAATTCTAGTAGTTCTGCTTCTGCTGCTGCTGGCCCAAGTTCCCTTTCTGTGACACTAAGTCTTTCTTCCTCAACAGTGGCTGCACCTCAATTCTCATGGTTGCAATCTGATAGGGGACCAGACAATGCTCCTTTTGTTTTGGAGAATATACCAGCTTTTAGTGAAAATATGCTGATATCTCAGATGGTGGAGCACTGCAAAGAGTTGGAAGAGGGGCAACGCGCCTTGGCTGTGCACAAGAAGGAGGCAGCTTGGAGATTAAGCCGGGTGGAGTTGCAGTTGGAGTCAGAGAAAGCTAGCCGAAGAAGGGAGAAGATGGAAGAGTTTGAAGCGAAGATTAAGGCTCTTCAGGAAGAGGAGAGAGCTGCTTTGAGCAGAATTGAAGCAGAATACAGAGAAGAATTAGCTGCATTGAAGAGAGATGCTGAAAACAAGGAGCAAAAGTTGACAGAACAATGGGCTGCAAAGCATTTGCAGCTCACTAGGTTGCTGGAGCAGATAGGATGCAGAGCAGGGCCTCCTTGA 1047 0.4623 MKERQRWRADEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKELNRIPDPINNNKYEHILESFAEKLVKEQHPSPSFVMATSDGTFLRTDTPAPASALLPSWLSNSSSSASAAAGPSSLSVTLSLSSSTVAAPQFSWLQSDRGPDNAPFVLENIPAFSENMLISQMVEHCKELEEGQRALAVHKKEAAWRLSRVELQLESEKASRRREKMEEFEAKIKALQEEERAALSRIEAEYREELAALKRDAENKEQKLTEQWAAKHLQLTRLLEQIGCRAGPP* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01091 348 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 345 - -
Lapu10g01091 348 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lapu10g01091 348 Gene3D - 62 128 - -
Lapu10g01091 348 Coils Coil 273 326 - -
Lapu10g01091 348 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lapu10g01091 348 CDD SANT 6 53 IPR001005 -
Lapu10g01091 348 Gene3D - 4 58 - -
Lapu10g01091 348 SMART sant 58 106 IPR001005 -
Lapu10g01091 348 SMART sant 3 55 IPR001005 -
Lapu10g01091 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Lapu10g01091 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lapu10g01091 348 CDD SANT 63 104 IPR001005 -
Lapu10g01091 348 Pfam Myb-like DNA-binding domain 7 68 - -
Lapu10g01091 348 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lapu10g01091 348 FunFam MYB-related transcription factor 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01091 Lapu-Chr10 13089214 13092605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01091 1 348 MYB Transcription Factor Family AT2G37630 60.434 1.04e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g01091 Myb_DNA-bind_6 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01091 K09422 - gmx:100101908 552.747